Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5499

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5498 and Pf6N2E2_5499 overlap by 4 nucleotidesPf6N2E2_5499 and Pf6N2E2_5500 are separated by 29 nucleotides Pf6N2E2_5498 - POSSIBLE CONSERVED MEMBRANE PROTEIN, at 6,316,281 to 6,317,612 _5498 Pf6N2E2_5499 - hypothetical protein, at 6,317,609 to 6,317,758 _5499 Pf6N2E2_5500 - MoxR-like ATPases, at 6,317,788 to 6,318,792 _5500 Position (kb) 6317 6318Strain fitness (log2 ratio) -1 0 1at 6316.646 kb on - strand, within Pf6N2E2_5498at 6316.678 kb on + strand, within Pf6N2E2_5498at 6316.679 kb on - strand, within Pf6N2E2_5498at 6316.679 kb on - strand, within Pf6N2E2_5498at 6316.795 kb on + strand, within Pf6N2E2_5498at 6316.795 kb on + strand, within Pf6N2E2_5498at 6316.795 kb on + strand, within Pf6N2E2_5498at 6316.796 kb on - strand, within Pf6N2E2_5498at 6316.796 kb on - strand, within Pf6N2E2_5498at 6317.092 kb on + strand, within Pf6N2E2_5498at 6317.093 kb on - strand, within Pf6N2E2_5498at 6317.093 kb on - strand, within Pf6N2E2_5498at 6317.114 kb on - strand, within Pf6N2E2_5498at 6317.418 kb on + strand, within Pf6N2E2_5498at 6317.666 kb on - strand, within Pf6N2E2_5499at 6317.744 kb on - strandat 6317.744 kb on - strandat 6317.785 kb on + strandat 6318.049 kb on + strand, within Pf6N2E2_5500at 6318.050 kb on - strand, within Pf6N2E2_5500at 6318.276 kb on - strand, within Pf6N2E2_5500at 6318.491 kb on + strand, within Pf6N2E2_5500at 6318.491 kb on + strand, within Pf6N2E2_5500

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,316,646 - Pf6N2E2_5498 0.27 +0.4
6,316,678 + Pf6N2E2_5498 0.30 -0.2
6,316,679 - Pf6N2E2_5498 0.30 -0.4
6,316,679 - Pf6N2E2_5498 0.30 +0.2
6,316,795 + Pf6N2E2_5498 0.39 +0.4
6,316,795 + Pf6N2E2_5498 0.39 -0.2
6,316,795 + Pf6N2E2_5498 0.39 -0.0
6,316,796 - Pf6N2E2_5498 0.39 +0.6
6,316,796 - Pf6N2E2_5498 0.39 -1.0
6,317,092 + Pf6N2E2_5498 0.61 -0.4
6,317,093 - Pf6N2E2_5498 0.61 +0.2
6,317,093 - Pf6N2E2_5498 0.61 -0.0
6,317,114 - Pf6N2E2_5498 0.63 +0.3
6,317,418 + Pf6N2E2_5498 0.85 -0.3
6,317,666 - Pf6N2E2_5499 0.38 -0.6
6,317,744 - -0.1
6,317,744 - -0.9
6,317,785 + -0.3
6,318,049 + Pf6N2E2_5500 0.26 -0.1
6,318,050 - Pf6N2E2_5500 0.26 -1.1
6,318,276 - Pf6N2E2_5500 0.49 +0.2
6,318,491 + Pf6N2E2_5500 0.70 -0.9
6,318,491 + Pf6N2E2_5500 0.70 +0.4

Or see this region's nucleotide sequence