Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4454

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4453 and Pf6N2E2_4454 are separated by 147 nucleotidesPf6N2E2_4454 and Pf6N2E2_4455 are separated by 250 nucleotidesPf6N2E2_4455 and Pf6N2E2_4456 overlap by 14 nucleotides Pf6N2E2_4453 - Polyphosphate kinase (EC 2.7.4.1), at 5,184,057 to 5,186,273 _4453 Pf6N2E2_4454 - Exopolyphosphatase (EC 3.6.1.11), at 5,186,421 to 5,187,923 _4454 Pf6N2E2_4455 - Glutamate transport ATP-binding protein, at 5,188,174 to 5,188,908 _4455 Pf6N2E2_4456 - Putative amino acid ABC transporter, permease protein, at 5,188,895 to 5,189,545 _4456 Position (kb) 5186 5187 5188Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5185.479 kb on + strand, within Pf6N2E2_4453at 5185.479 kb on + strand, within Pf6N2E2_4453at 5185.479 kb on + strand, within Pf6N2E2_4453at 5185.479 kb on + strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.487 kb on - strand, within Pf6N2E2_4453at 5185.578 kb on + strand, within Pf6N2E2_4453at 5185.578 kb on + strand, within Pf6N2E2_4453at 5185.578 kb on + strand, within Pf6N2E2_4453at 5185.579 kb on - strand, within Pf6N2E2_4453at 5185.579 kb on - strand, within Pf6N2E2_4453at 5185.579 kb on - strand, within Pf6N2E2_4453at 5185.602 kb on + strand, within Pf6N2E2_4453at 5185.603 kb on - strand, within Pf6N2E2_4453at 5185.611 kb on + strand, within Pf6N2E2_4453at 5185.611 kb on + strand, within Pf6N2E2_4453at 5185.611 kb on + strand, within Pf6N2E2_4453at 5185.612 kb on - strand, within Pf6N2E2_4453at 5185.612 kb on - strand, within Pf6N2E2_4453at 5185.612 kb on - strand, within Pf6N2E2_4453at 5185.796 kb on + strand, within Pf6N2E2_4453at 5185.848 kb on + strand, within Pf6N2E2_4453at 5185.848 kb on + strand, within Pf6N2E2_4453at 5185.849 kb on - strand, within Pf6N2E2_4453at 5185.849 kb on - strand, within Pf6N2E2_4453at 5185.849 kb on - strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.976 kb on + strand, within Pf6N2E2_4453at 5185.976 kb on + strand, within Pf6N2E2_4453at 5185.977 kb on - strand, within Pf6N2E2_4453at 5185.977 kb on - strand, within Pf6N2E2_4453at 5185.989 kb on + strand, within Pf6N2E2_4453at 5185.989 kb on + strand, within Pf6N2E2_4453at 5185.989 kb on + strand, within Pf6N2E2_4453at 5185.989 kb on + strand, within Pf6N2E2_4453at 5185.990 kb on - strand, within Pf6N2E2_4453at 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.179 kb on - strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.670 kb on - strand, within Pf6N2E2_4454at 5186.767 kb on + strand, within Pf6N2E2_4454at 5186.768 kb on - strand, within Pf6N2E2_4454at 5186.768 kb on - strand, within Pf6N2E2_4454at 5186.786 kb on - strand, within Pf6N2E2_4454at 5186.791 kb on + strand, within Pf6N2E2_4454at 5187.010 kb on - strand, within Pf6N2E2_4454at 5187.016 kb on + strand, within Pf6N2E2_4454at 5187.017 kb on - strand, within Pf6N2E2_4454at 5187.350 kb on + strand, within Pf6N2E2_4454at 5187.350 kb on + strand, within Pf6N2E2_4454at 5187.350 kb on + strand, within Pf6N2E2_4454at 5187.351 kb on - strand, within Pf6N2E2_4454at 5187.351 kb on - strand, within Pf6N2E2_4454at 5187.351 kb on - strand, within Pf6N2E2_4454at 5187.352 kb on + strand, within Pf6N2E2_4454at 5187.352 kb on + strand, within Pf6N2E2_4454at 5187.352 kb on + strand, within Pf6N2E2_4454at 5187.353 kb on - strand, within Pf6N2E2_4454at 5187.353 kb on - strand, within Pf6N2E2_4454at 5187.398 kb on - strand, within Pf6N2E2_4454at 5187.409 kb on + strand, within Pf6N2E2_4454at 5187.410 kb on - strand, within Pf6N2E2_4454at 5187.692 kb on + strand, within Pf6N2E2_4454at 5187.693 kb on - strand, within Pf6N2E2_4454at 5188.109 kb on + strandat 5188.109 kb on + strandat 5188.180 kb on + strandat 5188.180 kb on + strandat 5188.591 kb on + strand, within Pf6N2E2_4455at 5188.591 kb on + strand, within Pf6N2E2_4455at 5188.591 kb on + strand, within Pf6N2E2_4455at 5188.592 kb on - strand, within Pf6N2E2_4455at 5188.592 kb on - strand, within Pf6N2E2_4455at 5188.712 kb on + strand, within Pf6N2E2_4455at 5188.712 kb on + strand, within Pf6N2E2_4455at 5188.713 kb on - strand, within Pf6N2E2_4455at 5188.872 kb on - strandat 5188.872 kb on - strandat 5188.874 kb on + strandat 5188.874 kb on + strandat 5188.874 kb on + strandat 5188.874 kb on + strandat 5188.875 kb on - strandat 5188.875 kb on - strandat 5188.875 kb on - strandat 5188.875 kb on - strandat 5188.875 kb on - strandat 5188.875 kb on - strandat 5188.878 kb on + strandat 5188.879 kb on - strandat 5188.879 kb on - strandat 5188.879 kb on - strandat 5188.879 kb on - strandat 5188.896 kb on + strandat 5188.896 kb on + strandat 5188.896 kb on + strandat 5188.897 kb on - strandat 5188.897 kb on - strandat 5188.897 kb on - strandat 5188.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,185,479 + Pf6N2E2_4453 0.64 -1.2
5,185,479 + Pf6N2E2_4453 0.64 -1.5
5,185,479 + Pf6N2E2_4453 0.64 +0.0
5,185,479 + Pf6N2E2_4453 0.64 +0.9
5,185,480 - Pf6N2E2_4453 0.64 -0.1
5,185,480 - Pf6N2E2_4453 0.64 +1.0
5,185,480 - Pf6N2E2_4453 0.64 +0.4
5,185,480 - Pf6N2E2_4453 0.64 -0.2
5,185,480 - Pf6N2E2_4453 0.64 +0.1
5,185,487 - Pf6N2E2_4453 0.65 -0.1
5,185,578 + Pf6N2E2_4453 0.69 +0.8
5,185,578 + Pf6N2E2_4453 0.69 +1.0
5,185,578 + Pf6N2E2_4453 0.69 -1.4
5,185,579 - Pf6N2E2_4453 0.69 +0.4
5,185,579 - Pf6N2E2_4453 0.69 +0.2
5,185,579 - Pf6N2E2_4453 0.69 -0.8
5,185,602 + Pf6N2E2_4453 0.70 +1.3
5,185,603 - Pf6N2E2_4453 0.70 -0.2
5,185,611 + Pf6N2E2_4453 0.70 -0.3
5,185,611 + Pf6N2E2_4453 0.70 -1.1
5,185,611 + Pf6N2E2_4453 0.70 +0.4
5,185,612 - Pf6N2E2_4453 0.70 +0.2
5,185,612 - Pf6N2E2_4453 0.70 +1.6
5,185,612 - Pf6N2E2_4453 0.70 -0.1
5,185,796 + Pf6N2E2_4453 0.78 +0.4
5,185,848 + Pf6N2E2_4453 0.81 +0.2
5,185,848 + Pf6N2E2_4453 0.81 +1.4
5,185,849 - Pf6N2E2_4453 0.81 +0.7
5,185,849 - Pf6N2E2_4453 0.81 +0.0
5,185,849 - Pf6N2E2_4453 0.81 +0.1
5,185,945 + Pf6N2E2_4453 0.85 -0.7
5,185,945 + Pf6N2E2_4453 0.85 +0.2
5,185,945 + Pf6N2E2_4453 0.85 -0.3
5,185,945 + Pf6N2E2_4453 0.85 +0.1
5,185,945 + Pf6N2E2_4453 0.85 -0.1
5,185,945 + Pf6N2E2_4453 0.85 -0.1
5,185,945 + Pf6N2E2_4453 0.85 +0.4
5,185,945 + Pf6N2E2_4453 0.85 +0.3
5,185,945 + Pf6N2E2_4453 0.85 +0.2
5,185,946 - Pf6N2E2_4453 0.85 +0.3
5,185,946 - Pf6N2E2_4453 0.85 +0.7
5,185,946 - Pf6N2E2_4453 0.85 +0.4
5,185,946 - Pf6N2E2_4453 0.85 +0.0
5,185,946 - Pf6N2E2_4453 0.85 +0.3
5,185,946 - Pf6N2E2_4453 0.85 -0.6
5,185,946 - Pf6N2E2_4453 0.85 +1.5
5,185,946 - Pf6N2E2_4453 0.85 +0.6
5,185,946 - Pf6N2E2_4453 0.85 -0.6
5,185,976 + Pf6N2E2_4453 0.87 -0.0
5,185,976 + Pf6N2E2_4453 0.87 +0.2
5,185,977 - Pf6N2E2_4453 0.87 +0.4
5,185,977 - Pf6N2E2_4453 0.87 -0.5
5,185,989 + Pf6N2E2_4453 0.87 -0.0
5,185,989 + Pf6N2E2_4453 0.87 +0.2
5,185,989 + Pf6N2E2_4453 0.87 -0.1
5,185,989 + Pf6N2E2_4453 0.87 +0.1
5,185,990 - Pf6N2E2_4453 0.87 +0.5
5,186,130 + +0.2
5,186,130 + +3.2
5,186,130 + +0.1
5,186,130 + -0.3
5,186,130 + +0.3
5,186,130 + +0.5
5,186,178 + -0.5
5,186,178 + -0.1
5,186,178 + -0.8
5,186,178 + +0.4
5,186,178 + -0.3
5,186,178 + +0.0
5,186,179 - -0.1
5,186,401 + +0.0
5,186,401 + +0.0
5,186,401 + +0.6
5,186,401 + +0.1
5,186,401 + +0.5
5,186,401 + +0.1
5,186,401 + -0.2
5,186,401 + +0.8
5,186,401 + -0.0
5,186,401 + -0.6
5,186,401 + -0.1
5,186,401 + -0.4
5,186,402 - -0.1
5,186,402 - +0.5
5,186,402 - -0.4
5,186,402 - -0.1
5,186,402 - -0.3
5,186,402 - -0.3
5,186,670 - Pf6N2E2_4454 0.17 -1.0
5,186,767 + Pf6N2E2_4454 0.23 -2.1
5,186,768 - Pf6N2E2_4454 0.23 +0.5
5,186,768 - Pf6N2E2_4454 0.23 -0.7
5,186,786 - Pf6N2E2_4454 0.24 -0.2
5,186,791 + Pf6N2E2_4454 0.25 +0.9
5,187,010 - Pf6N2E2_4454 0.39 -1.2
5,187,016 + Pf6N2E2_4454 0.40 -0.5
5,187,017 - Pf6N2E2_4454 0.40 +0.0
5,187,350 + Pf6N2E2_4454 0.62 +0.1
5,187,350 + Pf6N2E2_4454 0.62 -0.0
5,187,350 + Pf6N2E2_4454 0.62 -2.5
5,187,351 - Pf6N2E2_4454 0.62 -1.9
5,187,351 - Pf6N2E2_4454 0.62 -1.5
5,187,351 - Pf6N2E2_4454 0.62 -0.3
5,187,352 + Pf6N2E2_4454 0.62 -1.0
5,187,352 + Pf6N2E2_4454 0.62 -1.5
5,187,352 + Pf6N2E2_4454 0.62 -0.5
5,187,353 - Pf6N2E2_4454 0.62 +0.1
5,187,353 - Pf6N2E2_4454 0.62 -2.0
5,187,398 - Pf6N2E2_4454 0.65 -0.5
5,187,409 + Pf6N2E2_4454 0.66 -0.8
5,187,410 - Pf6N2E2_4454 0.66 -1.9
5,187,692 + Pf6N2E2_4454 0.85 -0.3
5,187,693 - Pf6N2E2_4454 0.85 -0.5
5,188,109 + +0.5
5,188,109 + -0.4
5,188,180 + -0.3
5,188,180 + +0.2
5,188,591 + Pf6N2E2_4455 0.57 +0.6
5,188,591 + Pf6N2E2_4455 0.57 +0.6
5,188,591 + Pf6N2E2_4455 0.57 -0.7
5,188,592 - Pf6N2E2_4455 0.57 +0.4
5,188,592 - Pf6N2E2_4455 0.57 +0.1
5,188,712 + Pf6N2E2_4455 0.73 +0.6
5,188,712 + Pf6N2E2_4455 0.73 +0.8
5,188,713 - Pf6N2E2_4455 0.73 -0.3
5,188,872 - +0.4
5,188,872 - +0.5
5,188,874 + +0.5
5,188,874 + -0.1
5,188,874 + +0.3
5,188,874 + +1.2
5,188,875 - +0.2
5,188,875 - -1.0
5,188,875 - +0.0
5,188,875 - +0.0
5,188,875 - +0.9
5,188,875 - -1.6
5,188,878 + -0.0
5,188,879 - -0.4
5,188,879 - -0.6
5,188,879 - +0.6
5,188,879 - -0.5
5,188,896 + +0.5
5,188,896 + -0.7
5,188,896 + +0.2
5,188,897 - -0.3
5,188,897 - -0.6
5,188,897 - +0.2
5,188,897 - -0.9

Or see this region's nucleotide sequence