Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4216

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4215 and Pf6N2E2_4216 are separated by 209 nucleotidesPf6N2E2_4216 and Pf6N2E2_4217 are separated by 1 nucleotides Pf6N2E2_4215 - N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157), at 4,905,642 to 4,907,009 _4215 Pf6N2E2_4216 - Transcriptional regulator of glmS gene, DeoR family, at 4,907,219 to 4,907,995 _4216 Pf6N2E2_4217 - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16), at 4,907,997 to 4,909,829 _4217 Position (kb) 4907 4908Strain fitness (log2 ratio) -1 0 1at 4907.013 kb on + strandat 4907.059 kb on + strandat 4907.067 kb on - strandat 4907.708 kb on + strand, within Pf6N2E2_4216at 4907.761 kb on + strand, within Pf6N2E2_4216at 4907.761 kb on + strand, within Pf6N2E2_4216at 4907.823 kb on + strand, within Pf6N2E2_4216at 4907.823 kb on + strand, within Pf6N2E2_4216at 4907.823 kb on + strand, within Pf6N2E2_4216at 4907.959 kb on + strandat 4907.959 kb on + strandat 4907.959 kb on + strandat 4907.959 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,907,013 + -0.1
4,907,059 + +0.2
4,907,067 - -0.2
4,907,708 + Pf6N2E2_4216 0.63 +0.4
4,907,761 + Pf6N2E2_4216 0.70 -1.7
4,907,761 + Pf6N2E2_4216 0.70 -1.4
4,907,823 + Pf6N2E2_4216 0.78 -0.5
4,907,823 + Pf6N2E2_4216 0.78 +0.8
4,907,823 + Pf6N2E2_4216 0.78 -1.1
4,907,959 + -0.7
4,907,959 + -0.3
4,907,959 + +0.2
4,907,959 + +0.0

Or see this region's nucleotide sequence