Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3665 and Pf6N2E2_3666 overlap by 1 nucleotides Pf6N2E2_3666 and Pf6N2E2_3667 overlap by 4 nucleotides Pf6N2E2_3667 and Pf6N2E2_3668 overlap by 1 nucleotides
Pf6N2E2_3665 - serine/threonine protein kinase, at 4,267,394 to 4,268,848
_3665
Pf6N2E2_3666 - InaA protein, at 4,268,848 to 4,269,600
_3666
Pf6N2E2_3667 - Heptose kinase WapQ, eukaryotic type, at 4,269,597 to 4,270,331
_3667
Pf6N2E2_3668 - Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase, at 4,270,331 to 4,271,137
_3668
Position (kb) 4268
4269
4270 Strain fitness (log2 ratio) -1
0
1 at 4267.980 kb on - strand, within Pf6N2E2_3665 at 4269.303 kb on - strand, within Pf6N2E2_3666 at 4269.303 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.435 kb on - strand, within Pf6N2E2_3666 at 4269.435 kb on - strand, within Pf6N2E2_3666 at 4269.719 kb on - strand, within Pf6N2E2_3667 at 4269.719 kb on - strand, within Pf6N2E2_3667 at 4270.184 kb on - strand, within Pf6N2E2_3667
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,267,980 - Pf6N2E2_3665 0.40 -0.5 4,269,303 - Pf6N2E2_3666 0.60 +0.1 4,269,303 - Pf6N2E2_3666 0.60 -1.1 4,269,414 - Pf6N2E2_3666 0.75 -0.4 4,269,414 - Pf6N2E2_3666 0.75 -0.6 4,269,414 - Pf6N2E2_3666 0.75 -0.9 4,269,414 - Pf6N2E2_3666 0.75 +0.4 4,269,435 - Pf6N2E2_3666 0.78 -0.3 4,269,435 - Pf6N2E2_3666 0.78 -0.1 4,269,719 - Pf6N2E2_3667 0.17 -0.9 4,269,719 - Pf6N2E2_3667 0.17 +1.0 4,270,184 - Pf6N2E2_3667 0.80 -0.1
Or see this region's nucleotide sequence