Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3665

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3664 and Pf6N2E2_3665 are separated by 358 nucleotidesPf6N2E2_3665 and Pf6N2E2_3666 overlap by 1 nucleotidesPf6N2E2_3666 and Pf6N2E2_3667 overlap by 4 nucleotides Pf6N2E2_3664 - Carbamoyltransferase in large core OS assembly cluster, at 4,265,287 to 4,267,035 _3664 Pf6N2E2_3665 - serine/threonine protein kinase, at 4,267,394 to 4,268,848 _3665 Pf6N2E2_3666 - InaA protein, at 4,268,848 to 4,269,600 _3666 Pf6N2E2_3667 - Heptose kinase WapQ, eukaryotic type, at 4,269,597 to 4,270,331 _3667 Position (kb) 4267 4268 4269Strain fitness (log2 ratio) -1 0 1at 4266.720 kb on - strand, within Pf6N2E2_3664at 4266.785 kb on + strand, within Pf6N2E2_3664at 4266.786 kb on - strand, within Pf6N2E2_3664at 4266.929 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4267.043 kb on + strandat 4267.044 kb on - strandat 4267.051 kb on + strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.121 kb on - strandat 4267.121 kb on - strandat 4267.135 kb on + strandat 4267.135 kb on + strandat 4267.135 kb on + strandat 4267.141 kb on - strandat 4267.141 kb on - strandat 4267.153 kb on - strandat 4267.186 kb on + strandat 4267.186 kb on + strandat 4267.187 kb on - strandat 4267.193 kb on + strandat 4267.193 kb on + strandat 4267.242 kb on - strandat 4267.343 kb on + strandat 4267.344 kb on - strandat 4267.384 kb on - strandat 4267.395 kb on + strandat 4267.980 kb on - strand, within Pf6N2E2_3665at 4269.303 kb on - strand, within Pf6N2E2_3666at 4269.303 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.435 kb on - strand, within Pf6N2E2_3666at 4269.435 kb on - strand, within Pf6N2E2_3666at 4269.719 kb on - strand, within Pf6N2E2_3667at 4269.719 kb on - strand, within Pf6N2E2_3667

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
4,266,720 - Pf6N2E2_3664 0.82 -0.1
4,266,785 + Pf6N2E2_3664 0.86 +0.5
4,266,786 - Pf6N2E2_3664 0.86 +0.4
4,266,929 - +0.9
4,266,975 - +0.3
4,266,975 - +0.3
4,266,975 - +0.1
4,266,975 - +0.9
4,266,975 - +0.0
4,266,975 - +0.7
4,266,975 - +0.2
4,267,043 + -0.8
4,267,044 - +1.7
4,267,051 + +0.6
4,267,052 - +0.5
4,267,052 - -0.4
4,267,052 - +0.4
4,267,052 - +0.3
4,267,052 - +0.3
4,267,052 - -0.4
4,267,052 - -0.6
4,267,121 - +0.1
4,267,121 - +0.2
4,267,135 + +0.2
4,267,135 + +0.4
4,267,135 + +0.1
4,267,141 - +0.4
4,267,141 - +0.2
4,267,153 - -0.4
4,267,186 + +0.1
4,267,186 + +0.1
4,267,187 - +0.1
4,267,193 + +0.7
4,267,193 + +0.4
4,267,242 - -0.9
4,267,343 + -0.1
4,267,344 - +0.2
4,267,384 - -0.0
4,267,395 + -0.2
4,267,980 - Pf6N2E2_3665 0.40 -0.5
4,269,303 - Pf6N2E2_3666 0.60 +0.1
4,269,303 - Pf6N2E2_3666 0.60 -1.1
4,269,414 - Pf6N2E2_3666 0.75 -0.4
4,269,414 - Pf6N2E2_3666 0.75 -0.6
4,269,414 - Pf6N2E2_3666 0.75 -0.9
4,269,414 - Pf6N2E2_3666 0.75 +0.4
4,269,435 - Pf6N2E2_3666 0.78 -0.3
4,269,435 - Pf6N2E2_3666 0.78 -0.1
4,269,719 - Pf6N2E2_3667 0.17 -0.9
4,269,719 - Pf6N2E2_3667 0.17 +1.0

Or see this region's nucleotide sequence