Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_341 and Pf6N2E2_342 overlap by 4 nucleotides Pf6N2E2_342 and Pf6N2E2_343 are separated by 397 nucleotides
Pf6N2E2_341 - sensor histidine kinase, at 408,044 to 409,390
_341
Pf6N2E2_342 - DNA-binding response regulator, at 409,387 to 410,097
_342
Pf6N2E2_343 - VacJ-like lipoprotein precursor, at 410,495 to 411,226
_343
Position (kb) 409
410
411 Strain fitness (log2 ratio) -1
0
1
2 at 408.668 kb on + strand, within Pf6N2E2_341 at 409.011 kb on + strand, within Pf6N2E2_341 at 409.012 kb on - strand, within Pf6N2E2_341 at 409.805 kb on + strand, within Pf6N2E2_342 at 410.086 kb on + strand at 410.087 kb on - strand at 410.087 kb on - strand at 410.087 kb on - strand at 410.120 kb on + strand at 410.121 kb on - strand at 410.135 kb on + strand at 410.135 kb on + strand at 410.135 kb on + strand at 410.136 kb on - strand at 410.160 kb on + strand at 410.161 kb on - strand at 410.162 kb on + strand at 410.162 kb on + strand at 410.162 kb on + strand at 410.163 kb on - strand at 410.178 kb on + strand at 410.179 kb on - strand at 410.404 kb on - strand at 410.437 kb on + strand at 410.490 kb on + strand at 410.490 kb on + strand at 410.491 kb on - strand at 410.491 kb on - strand at 410.491 kb on - strand at 410.561 kb on + strand at 410.561 kb on + strand at 410.561 kb on + strand at 410.562 kb on - strand at 410.562 kb on - strand at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.734 kb on - strand, within Pf6N2E2_343 at 410.745 kb on + strand, within Pf6N2E2_343 at 410.745 kb on + strand, within Pf6N2E2_343 at 410.745 kb on + strand, within Pf6N2E2_343 at 410.745 kb on + strand, within Pf6N2E2_343 at 410.746 kb on - strand, within Pf6N2E2_343 at 410.746 kb on - strand, within Pf6N2E2_343 at 410.746 kb on - strand, within Pf6N2E2_343 at 410.858 kb on - strand, within Pf6N2E2_343
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 408,668 + Pf6N2E2_341 0.46 +1.0 409,011 + Pf6N2E2_341 0.72 +0.4 409,012 - Pf6N2E2_341 0.72 +0.0 409,805 + Pf6N2E2_342 0.59 -0.5 410,086 + -0.3 410,087 - +0.4 410,087 - +0.9 410,087 - -0.2 410,120 + -0.1 410,121 - -0.2 410,135 + +0.7 410,135 + +0.2 410,135 + +0.4 410,136 - -0.3 410,160 + -0.7 410,161 - -1.1 410,162 + +0.3 410,162 + +0.7 410,162 + +0.3 410,163 - -0.0 410,178 + -0.2 410,179 - +0.3 410,404 - +0.7 410,437 + -0.2 410,490 + +0.1 410,490 + +0.4 410,491 - +0.4 410,491 - +0.4 410,491 - +1.0 410,561 + -1.7 410,561 + +0.5 410,561 + -0.0 410,562 - -0.5 410,562 - +0.2 410,630 + Pf6N2E2_343 0.18 +0.2 410,630 + Pf6N2E2_343 0.18 -0.9 410,630 + Pf6N2E2_343 0.18 -0.3 410,630 + Pf6N2E2_343 0.18 -0.5 410,630 + Pf6N2E2_343 0.18 +0.3 410,630 + Pf6N2E2_343 0.18 -0.3 410,631 - Pf6N2E2_343 0.19 -0.2 410,631 - Pf6N2E2_343 0.19 -0.8 410,631 - Pf6N2E2_343 0.19 +0.6 410,631 - Pf6N2E2_343 0.19 -0.3 410,631 - Pf6N2E2_343 0.19 +1.0 410,631 - Pf6N2E2_343 0.19 +0.3 410,631 - Pf6N2E2_343 0.19 +0.5 410,734 - Pf6N2E2_343 0.33 +0.6 410,745 + Pf6N2E2_343 0.34 +0.3 410,745 + Pf6N2E2_343 0.34 -0.5 410,745 + Pf6N2E2_343 0.34 -0.1 410,745 + Pf6N2E2_343 0.34 +1.8 410,746 - Pf6N2E2_343 0.34 +0.3 410,746 - Pf6N2E2_343 0.34 +0.6 410,746 - Pf6N2E2_343 0.34 +0.4 410,858 - Pf6N2E2_343 0.50 -0.3
Or see this region's nucleotide sequence