Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_289 and Pf6N2E2_290 are separated by 77 nucleotides Pf6N2E2_290 and Pf6N2E2_291 are separated by 343 nucleotides Pf6N2E2_291 and Pf6N2E2_292 are separated by 29 nucleotides
Pf6N2E2_289 - Isocitrate dehydrogenase [NADP] (EC 1.1.1.42), at 358,365 to 359,621
_289
Pf6N2E2_290 - Cold shock protein CspD, at 359,699 to 359,968
_290
Pf6N2E2_291 - ATP-dependent Clp protease adaptor protein ClpS, at 360,312 to 360,557
_291
Pf6N2E2_292 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 360,587 to 362,857
_292
Position (kb) 359
360 Strain fitness (log2 ratio) -2
-1
0
1 at 358.743 kb on + strand, within Pf6N2E2_289 at 358.744 kb on - strand, within Pf6N2E2_289 at 358.744 kb on - strand, within Pf6N2E2_289 at 358.744 kb on - strand, within Pf6N2E2_289 at 358.744 kb on - strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 359.016 kb on + strand, within Pf6N2E2_289 at 359.016 kb on + strand, within Pf6N2E2_289 at 359.016 kb on + strand, within Pf6N2E2_289 at 359.016 kb on + strand, within Pf6N2E2_289 at 359.016 kb on + strand, within Pf6N2E2_289 at 359.016 kb on + strand, within Pf6N2E2_289 at 359.016 kb on + strand, within Pf6N2E2_289 at 359.017 kb on - strand, within Pf6N2E2_289 at 359.017 kb on - strand, within Pf6N2E2_289 at 359.017 kb on - strand, within Pf6N2E2_289 at 359.057 kb on + strand, within Pf6N2E2_289 at 359.106 kb on + strand, within Pf6N2E2_289 at 359.106 kb on + strand, within Pf6N2E2_289 at 359.107 kb on - strand, within Pf6N2E2_289 at 359.256 kb on + strand, within Pf6N2E2_289 at 359.256 kb on + strand, within Pf6N2E2_289 at 359.263 kb on + strand, within Pf6N2E2_289 at 359.263 kb on + strand, within Pf6N2E2_289 at 359.264 kb on - strand, within Pf6N2E2_289 at 359.293 kb on - strand, within Pf6N2E2_289 at 359.293 kb on - strand, within Pf6N2E2_289 at 359.293 kb on - strand, within Pf6N2E2_289 at 359.403 kb on + strand, within Pf6N2E2_289 at 359.403 kb on + strand, within Pf6N2E2_289 at 359.404 kb on - strand, within Pf6N2E2_289 at 359.404 kb on - strand, within Pf6N2E2_289 at 359.404 kb on - strand, within Pf6N2E2_289 at 359.541 kb on + strand at 359.541 kb on + strand at 359.541 kb on + strand at 359.541 kb on + strand at 359.541 kb on + strand at 359.541 kb on + strand at 359.542 kb on - strand at 359.542 kb on - strand at 359.542 kb on - strand at 359.542 kb on - strand at 359.542 kb on - strand at 359.542 kb on - strand at 359.542 kb on - strand at 359.619 kb on + strand at 359.619 kb on + strand at 359.619 kb on + strand at 359.620 kb on - strand at 359.620 kb on - strand at 359.620 kb on - strand at 359.620 kb on - strand at 359.620 kb on - strand at 359.620 kb on - strand at 359.836 kb on + strand, within Pf6N2E2_290 at 359.836 kb on + strand, within Pf6N2E2_290 at 359.837 kb on - strand, within Pf6N2E2_290 at 359.837 kb on - strand, within Pf6N2E2_290 at 359.838 kb on + strand, within Pf6N2E2_290 at 359.838 kb on + strand, within Pf6N2E2_290 at 359.838 kb on + strand, within Pf6N2E2_290 at 359.839 kb on - strand, within Pf6N2E2_290 at 359.862 kb on + strand, within Pf6N2E2_290 at 359.968 kb on + strand at 359.968 kb on + strand at 360.007 kb on - strand at 360.007 kb on - strand at 360.007 kb on - strand at 360.007 kb on - strand at 360.029 kb on + strand at 360.030 kb on - strand at 360.040 kb on + strand at 360.040 kb on + strand at 360.040 kb on + strand at 360.041 kb on - strand at 360.041 kb on - strand at 360.041 kb on - strand at 360.047 kb on - strand at 360.083 kb on - strand at 360.083 kb on - strand at 360.092 kb on - strand at 360.092 kb on - strand at 360.165 kb on + strand at 360.165 kb on + strand at 360.176 kb on + strand at 360.176 kb on + strand at 360.177 kb on - strand at 360.177 kb on - strand at 360.221 kb on - strand at 360.221 kb on - strand at 360.248 kb on - strand at 360.298 kb on + strand at 360.298 kb on + strand at 360.299 kb on - strand at 360.315 kb on + strand at 360.315 kb on + strand at 360.315 kb on + strand at 360.315 kb on + strand at 360.316 kb on - strand at 360.342 kb on + strand, within Pf6N2E2_291 at 360.342 kb on + strand, within Pf6N2E2_291 at 360.342 kb on + strand, within Pf6N2E2_291 at 360.431 kb on + strand, within Pf6N2E2_291 at 360.431 kb on + strand, within Pf6N2E2_291 at 360.432 kb on - strand, within Pf6N2E2_291 at 360.448 kb on + strand, within Pf6N2E2_291 at 360.448 kb on + strand, within Pf6N2E2_291 at 360.449 kb on - strand, within Pf6N2E2_291 at 360.530 kb on - strand, within Pf6N2E2_291 at 360.573 kb on + strand at 360.586 kb on + strand at 360.586 kb on + strand at 360.586 kb on + strand at 360.586 kb on + strand at 360.587 kb on - strand at 360.587 kb on - strand at 360.587 kb on - strand at 360.591 kb on + strand at 360.688 kb on - strand at 360.870 kb on + strand, within Pf6N2E2_292 at 360.870 kb on + strand, within Pf6N2E2_292 at 360.870 kb on + strand, within Pf6N2E2_292 at 360.870 kb on + strand, within Pf6N2E2_292 at 360.870 kb on + strand, within Pf6N2E2_292 at 360.871 kb on - strand, within Pf6N2E2_292 at 360.871 kb on - strand, within Pf6N2E2_292 at 360.871 kb on - strand, within Pf6N2E2_292 at 360.871 kb on - strand, within Pf6N2E2_292
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 358,743 + Pf6N2E2_289 0.30 +0.1 358,744 - Pf6N2E2_289 0.30 -1.0 358,744 - Pf6N2E2_289 0.30 +0.3 358,744 - Pf6N2E2_289 0.30 +0.7 358,744 - Pf6N2E2_289 0.30 +0.6 358,848 + Pf6N2E2_289 0.38 -0.9 358,848 + Pf6N2E2_289 0.38 -1.3 358,848 + Pf6N2E2_289 0.38 +0.8 358,848 + Pf6N2E2_289 0.38 -1.1 358,848 + Pf6N2E2_289 0.38 -1.0 358,848 + Pf6N2E2_289 0.38 +0.1 358,848 + Pf6N2E2_289 0.38 +1.2 358,848 + Pf6N2E2_289 0.38 -0.1 358,848 + Pf6N2E2_289 0.38 +0.1 358,848 + Pf6N2E2_289 0.38 -0.3 358,848 + Pf6N2E2_289 0.38 -0.3 358,848 + Pf6N2E2_289 0.38 +0.9 358,849 - Pf6N2E2_289 0.39 -0.3 358,849 - Pf6N2E2_289 0.39 +0.2 358,849 - Pf6N2E2_289 0.39 -0.1 358,849 - Pf6N2E2_289 0.39 -0.1 358,849 - Pf6N2E2_289 0.39 -1.4 358,849 - Pf6N2E2_289 0.39 +0.7 358,849 - Pf6N2E2_289 0.39 +0.1 359,016 + Pf6N2E2_289 0.52 +0.8 359,016 + Pf6N2E2_289 0.52 +0.7 359,016 + Pf6N2E2_289 0.52 -0.1 359,016 + Pf6N2E2_289 0.52 +0.2 359,016 + Pf6N2E2_289 0.52 +0.3 359,016 + Pf6N2E2_289 0.52 +0.8 359,016 + Pf6N2E2_289 0.52 +1.3 359,017 - Pf6N2E2_289 0.52 -0.1 359,017 - Pf6N2E2_289 0.52 +0.9 359,017 - Pf6N2E2_289 0.52 +0.6 359,057 + Pf6N2E2_289 0.55 +1.0 359,106 + Pf6N2E2_289 0.59 -0.4 359,106 + Pf6N2E2_289 0.59 -0.6 359,107 - Pf6N2E2_289 0.59 -0.0 359,256 + Pf6N2E2_289 0.71 +0.3 359,256 + Pf6N2E2_289 0.71 -0.8 359,263 + Pf6N2E2_289 0.71 +0.0 359,263 + Pf6N2E2_289 0.71 +0.5 359,264 - Pf6N2E2_289 0.72 -0.5 359,293 - Pf6N2E2_289 0.74 -0.3 359,293 - Pf6N2E2_289 0.74 -1.1 359,293 - Pf6N2E2_289 0.74 +0.8 359,403 + Pf6N2E2_289 0.83 +0.3 359,403 + Pf6N2E2_289 0.83 -0.1 359,404 - Pf6N2E2_289 0.83 +0.3 359,404 - Pf6N2E2_289 0.83 +0.0 359,404 - Pf6N2E2_289 0.83 +0.1 359,541 + +0.4 359,541 + +0.2 359,541 + +0.2 359,541 + +0.1 359,541 + +0.1 359,541 + -0.7 359,542 - +1.1 359,542 - +0.4 359,542 - +0.7 359,542 - +0.5 359,542 - +0.5 359,542 - +1.7 359,542 - -0.0 359,619 + -0.9 359,619 + -0.1 359,619 + -1.2 359,620 - +0.7 359,620 - -0.5 359,620 - -0.3 359,620 - +0.5 359,620 - -0.5 359,620 - +0.4 359,836 + Pf6N2E2_290 0.51 -1.5 359,836 + Pf6N2E2_290 0.51 +0.5 359,837 - Pf6N2E2_290 0.51 -1.0 359,837 - Pf6N2E2_290 0.51 +0.3 359,838 + Pf6N2E2_290 0.51 +0.1 359,838 + Pf6N2E2_290 0.51 -1.5 359,838 + Pf6N2E2_290 0.51 +0.4 359,839 - Pf6N2E2_290 0.52 -2.7 359,862 + Pf6N2E2_290 0.60 -1.1 359,968 + -0.6 359,968 + +0.2 360,007 - -0.1 360,007 - -0.4 360,007 - -0.5 360,007 - +0.1 360,029 + +0.7 360,030 - +0.1 360,040 + +0.1 360,040 + -0.2 360,040 + +0.6 360,041 - +0.3 360,041 - -0.0 360,041 - -0.7 360,047 - -0.9 360,083 - +1.7 360,083 - +0.4 360,092 - +0.7 360,092 - +0.0 360,165 + -1.7 360,165 + -0.4 360,176 + +0.6 360,176 + +0.1 360,177 - -0.0 360,177 - -0.0 360,221 - +0.7 360,221 - -0.5 360,248 - -0.1 360,298 + -0.2 360,298 + -0.0 360,299 - +0.4 360,315 + -0.1 360,315 + -1.3 360,315 + +0.6 360,315 + -0.6 360,316 - -0.5 360,342 + Pf6N2E2_291 0.12 +0.9 360,342 + Pf6N2E2_291 0.12 -1.5 360,342 + Pf6N2E2_291 0.12 -0.4 360,431 + Pf6N2E2_291 0.48 +0.3 360,431 + Pf6N2E2_291 0.48 -0.3 360,432 - Pf6N2E2_291 0.49 +0.4 360,448 + Pf6N2E2_291 0.55 -0.4 360,448 + Pf6N2E2_291 0.55 -0.7 360,449 - Pf6N2E2_291 0.56 +0.2 360,530 - Pf6N2E2_291 0.89 -0.0 360,573 + +0.1 360,586 + +0.8 360,586 + +0.3 360,586 + +0.6 360,586 + -0.4 360,587 - +0.2 360,587 - -0.8 360,587 - -1.9 360,591 + +0.6 360,688 - +0.4 360,870 + Pf6N2E2_292 0.12 -0.5 360,870 + Pf6N2E2_292 0.12 -0.3 360,870 + Pf6N2E2_292 0.12 -0.9 360,870 + Pf6N2E2_292 0.12 -0.0 360,870 + Pf6N2E2_292 0.12 +0.4 360,871 - Pf6N2E2_292 0.13 -0.1 360,871 - Pf6N2E2_292 0.13 -0.5 360,871 - Pf6N2E2_292 0.13 -0.8 360,871 - Pf6N2E2_292 0.13 +0.2
Or see this region's nucleotide sequence