Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1797

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1796 and Pf6N2E2_1797 are separated by 440 nucleotidesPf6N2E2_1797 and Pf6N2E2_1798 are separated by 295 nucleotides Pf6N2E2_1796 - Glycine cleavage system transcriptional activator GcvA, at 2,124,977 to 2,125,777 _1796 Pf6N2E2_1797 - Transcriptional regulator, at 2,126,218 to 2,127,183 _1797 Pf6N2E2_1798 - Argininosuccinate lyase (EC 4.3.2.1), at 2,127,479 to 2,128,906 _1798 Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -1 0 1at 2125.487 kb on - strand, within Pf6N2E2_1796at 2125.895 kb on + strandat 2125.962 kb on - strandat 2126.086 kb on + strandat 2126.087 kb on - strandat 2126.087 kb on - strandat 2126.133 kb on + strandat 2126.134 kb on - strandat 2126.134 kb on - strandat 2126.141 kb on + strandat 2126.157 kb on - strandat 2126.284 kb on + strandat 2126.285 kb on - strandat 2126.382 kb on - strand, within Pf6N2E2_1797at 2126.619 kb on - strand, within Pf6N2E2_1797at 2126.627 kb on + strand, within Pf6N2E2_1797at 2126.902 kb on + strand, within Pf6N2E2_1797at 2127.191 kb on - strandat 2127.639 kb on + strand, within Pf6N2E2_1798at 2127.752 kb on - strand, within Pf6N2E2_1798at 2128.030 kb on - strand, within Pf6N2E2_1798at 2128.030 kb on - strand, within Pf6N2E2_1798at 2128.054 kb on - strand, within Pf6N2E2_1798at 2128.054 kb on - strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.058 kb on - strand, within Pf6N2E2_1798at 2128.058 kb on - strand, within Pf6N2E2_1798at 2128.058 kb on - strand, within Pf6N2E2_1798at 2128.058 kb on - strand, within Pf6N2E2_1798

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,125,487 - Pf6N2E2_1796 0.64 +0.6
2,125,895 + +0.2
2,125,962 - -0.3
2,126,086 + +0.4
2,126,087 - +0.7
2,126,087 - +0.3
2,126,133 + +0.7
2,126,134 - +0.6
2,126,134 - +0.7
2,126,141 + -0.5
2,126,157 - -0.3
2,126,284 + -0.7
2,126,285 - +0.8
2,126,382 - Pf6N2E2_1797 0.17 -0.7
2,126,619 - Pf6N2E2_1797 0.42 +0.2
2,126,627 + Pf6N2E2_1797 0.42 -1.4
2,126,902 + Pf6N2E2_1797 0.71 -1.3
2,127,191 - +0.0
2,127,639 + Pf6N2E2_1798 0.11 +0.2
2,127,752 - Pf6N2E2_1798 0.19 -0.9
2,128,030 - Pf6N2E2_1798 0.39 -0.7
2,128,030 - Pf6N2E2_1798 0.39 +0.7
2,128,054 - Pf6N2E2_1798 0.40 +1.1
2,128,054 - Pf6N2E2_1798 0.40 +0.2
2,128,057 + Pf6N2E2_1798 0.40 -0.9
2,128,057 + Pf6N2E2_1798 0.40 +0.6
2,128,057 + Pf6N2E2_1798 0.40 -0.1
2,128,057 + Pf6N2E2_1798 0.40 +0.2
2,128,057 + Pf6N2E2_1798 0.40 +1.4
2,128,058 - Pf6N2E2_1798 0.41 +0.8
2,128,058 - Pf6N2E2_1798 0.41 +0.0
2,128,058 - Pf6N2E2_1798 0.41 +0.8
2,128,058 - Pf6N2E2_1798 0.41 -0.6

Or see this region's nucleotide sequence