Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1136

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1134 and Pf6N2E2_1135 are separated by 285 nucleotidesPf6N2E2_1135 and Pf6N2E2_1136 are separated by 45 nucleotidesPf6N2E2_1136 and Pf6N2E2_1137 are separated by 121 nucleotides Pf6N2E2_1134 - Ribosomal protein S3AE, at 1,331,338 to 1,331,739 _1134 Pf6N2E2_1135 - COGs COG3558, at 1,332,025 to 1,332,504 _1135 Pf6N2E2_1136 - Transcriptional regulator, TetR family, at 1,332,550 to 1,333,113 _1136 Pf6N2E2_1137 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 1,333,235 to 1,334,578 _1137 Position (kb) 1332 1333 1334Strain fitness (log2 ratio) -1 0 1 2at 1331.950 kb on + strandat 1332.014 kb on - strandat 1332.026 kb on + strandat 1332.026 kb on + strandat 1332.140 kb on + strand, within Pf6N2E2_1135at 1332.140 kb on + strand, within Pf6N2E2_1135at 1332.140 kb on + strand, within Pf6N2E2_1135at 1332.140 kb on + strand, within Pf6N2E2_1135at 1332.141 kb on - strand, within Pf6N2E2_1135at 1332.141 kb on - strand, within Pf6N2E2_1135at 1332.141 kb on - strand, within Pf6N2E2_1135at 1332.182 kb on + strand, within Pf6N2E2_1135at 1332.222 kb on - strand, within Pf6N2E2_1135at 1332.222 kb on - strand, within Pf6N2E2_1135at 1332.222 kb on - strand, within Pf6N2E2_1135at 1332.228 kb on - strand, within Pf6N2E2_1135at 1332.713 kb on + strand, within Pf6N2E2_1136at 1332.978 kb on - strand, within Pf6N2E2_1136at 1333.048 kb on - strand, within Pf6N2E2_1136at 1333.194 kb on + strandat 1333.194 kb on + strandat 1333.195 kb on - strandat 1333.195 kb on - strandat 1333.234 kb on + strandat 1333.235 kb on - strandat 1333.235 kb on - strandat 1333.376 kb on + strand, within Pf6N2E2_1137at 1333.376 kb on + strand, within Pf6N2E2_1137at 1333.377 kb on - strand, within Pf6N2E2_1137at 1333.377 kb on - strand, within Pf6N2E2_1137at 1333.377 kb on - strand, within Pf6N2E2_1137at 1333.391 kb on + strand, within Pf6N2E2_1137at 1333.392 kb on - strand, within Pf6N2E2_1137at 1333.589 kb on + strand, within Pf6N2E2_1137at 1333.590 kb on - strand, within Pf6N2E2_1137at 1333.590 kb on - strand, within Pf6N2E2_1137at 1333.688 kb on - strand, within Pf6N2E2_1137at 1333.688 kb on - strand, within Pf6N2E2_1137at 1333.688 kb on - strand, within Pf6N2E2_1137at 1333.694 kb on + strand, within Pf6N2E2_1137at 1333.890 kb on - strand, within Pf6N2E2_1137at 1333.899 kb on - strand, within Pf6N2E2_1137at 1333.899 kb on - strand, within Pf6N2E2_1137at 1333.899 kb on - strand, within Pf6N2E2_1137at 1333.899 kb on - strand, within Pf6N2E2_1137at 1334.039 kb on + strand, within Pf6N2E2_1137at 1334.039 kb on + strand, within Pf6N2E2_1137at 1334.040 kb on - strand, within Pf6N2E2_1137at 1334.040 kb on - strand, within Pf6N2E2_1137at 1334.040 kb on - strand, within Pf6N2E2_1137

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,331,950 + -0.8
1,332,014 - +0.6
1,332,026 + +1.9
1,332,026 + +1.6
1,332,140 + Pf6N2E2_1135 0.24 -0.0
1,332,140 + Pf6N2E2_1135 0.24 +0.7
1,332,140 + Pf6N2E2_1135 0.24 +0.3
1,332,140 + Pf6N2E2_1135 0.24 +0.3
1,332,141 - Pf6N2E2_1135 0.24 +0.8
1,332,141 - Pf6N2E2_1135 0.24 -0.1
1,332,141 - Pf6N2E2_1135 0.24 +0.6
1,332,182 + Pf6N2E2_1135 0.33 -0.4
1,332,222 - Pf6N2E2_1135 0.41 -0.4
1,332,222 - Pf6N2E2_1135 0.41 -0.1
1,332,222 - Pf6N2E2_1135 0.41 +0.0
1,332,228 - Pf6N2E2_1135 0.42 -0.1
1,332,713 + Pf6N2E2_1136 0.29 -0.2
1,332,978 - Pf6N2E2_1136 0.76 -1.5
1,333,048 - Pf6N2E2_1136 0.88 -0.1
1,333,194 + +0.0
1,333,194 + +0.2
1,333,195 - +0.9
1,333,195 - +0.3
1,333,234 + -0.3
1,333,235 - -0.9
1,333,235 - -0.2
1,333,376 + Pf6N2E2_1137 0.10 -0.4
1,333,376 + Pf6N2E2_1137 0.10 +0.7
1,333,377 - Pf6N2E2_1137 0.11 +0.7
1,333,377 - Pf6N2E2_1137 0.11 -1.1
1,333,377 - Pf6N2E2_1137 0.11 +0.0
1,333,391 + Pf6N2E2_1137 0.12 -0.5
1,333,392 - Pf6N2E2_1137 0.12 +0.0
1,333,589 + Pf6N2E2_1137 0.26 -0.3
1,333,590 - Pf6N2E2_1137 0.26 -0.0
1,333,590 - Pf6N2E2_1137 0.26 -0.1
1,333,688 - Pf6N2E2_1137 0.34 -0.0
1,333,688 - Pf6N2E2_1137 0.34 -0.0
1,333,688 - Pf6N2E2_1137 0.34 +0.6
1,333,694 + Pf6N2E2_1137 0.34 +0.6
1,333,890 - Pf6N2E2_1137 0.49 +0.6
1,333,899 - Pf6N2E2_1137 0.49 -0.8
1,333,899 - Pf6N2E2_1137 0.49 +1.2
1,333,899 - Pf6N2E2_1137 0.49 +0.0
1,333,899 - Pf6N2E2_1137 0.49 +0.3
1,334,039 + Pf6N2E2_1137 0.60 -0.1
1,334,039 + Pf6N2E2_1137 0.60 -0.3
1,334,040 - Pf6N2E2_1137 0.60 +0.9
1,334,040 - Pf6N2E2_1137 0.60 -1.7
1,334,040 - Pf6N2E2_1137 0.60 +0.5

Or see this region's nucleotide sequence