Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09100

Experiment: formate N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate N-free with 10mM Ammonium chloride
1,681,854	+		MMJJ_RS09095	0.18	-1.4
1,681,871	-		MMJJ_RS09095	0.20	-0.9
1,681,925	-		MMJJ_RS09095	0.25	+1.1
1,682,094	+		MMJJ_RS09095	0.39	-1.2
1,682,120	-		MMJJ_RS09095	0.41	-4.6
1,682,121	+		MMJJ_RS09095	0.41	-2.9
1,682,125	-		MMJJ_RS09095	0.42	-0.8
1,682,319	-		MMJJ_RS09095	0.58	-1.4
1,682,320	+		MMJJ_RS09095	0.58	-2.6
1,682,335	-		MMJJ_RS09095	0.60	-1.9
1,682,336	+		MMJJ_RS09095	0.60	-1.9
1,682,346	-		MMJJ_RS09095	0.61	-1.5
1,682,351	-		MMJJ_RS09095	0.61	-1.1
1,682,352	+		MMJJ_RS09095	0.61	-1.0
1,682,372	-		MMJJ_RS09095	0.63	-1.9
1,682,422	+		MMJJ_RS09095	0.67	-0.3
1,682,510	+		MMJJ_RS09095	0.75	-2.0
1,682,552	-		MMJJ_RS09095	0.78	-1.0
1,682,565	+		MMJJ_RS09095	0.79	-1.7
1,682,565	+		MMJJ_RS09095	0.79	-2.3
1,682,565	+		MMJJ_RS09095	0.79	-1.1
1,682,568	+		MMJJ_RS09095	0.80	-2.2
1,682,571	-		MMJJ_RS09095	0.80	-2.7
1,682,595	-		MMJJ_RS09095	0.82	-1.0
1,682,595	-		MMJJ_RS09095	0.82	-0.8
1,682,596	+		MMJJ_RS09095	0.82	-0.6
1,682,674	+		MMJJ_RS09095	0.89	-1.0
1,682,682	-		MMJJ_RS09095	0.89	-2.1
1,682,694	-				-2.9
1,682,778	+				+2.0
1,682,823	-				-1.0
1,682,888	-				-1.7
1,682,890	-				-3.1
1,682,890	-				-0.5
1,682,891	+				-0.6
1,682,905	+				-1.5
1,682,928	-				-1.0
1,682,967	-		MMJJ_RS09100	0.11	-1.7
1,682,968	+		MMJJ_RS09100	0.11	-0.7
1,682,980	+		MMJJ_RS09100	0.12	-3.2
1,683,024	-		MMJJ_RS09100	0.14	-0.4
1,683,086	-		MMJJ_RS09100	0.18	-2.6
1,683,100	-		MMJJ_RS09100	0.19	-2.0
1,683,128	-		MMJJ_RS09100	0.21	-2.0
1,683,167	-		MMJJ_RS09100	0.23	-1.0
1,683,168	+		MMJJ_RS09100	0.24	-1.9
1,683,190	-		MMJJ_RS09100	0.25	-1.4
1,683,204	+		MMJJ_RS09100	0.26	-1.9
1,683,215	-		MMJJ_RS09100	0.27	-0.4
1,683,218	-		MMJJ_RS09100	0.27	-0.8
1,683,218	-		MMJJ_RS09100	0.27	-1.3
1,683,220	-		MMJJ_RS09100	0.27	-0.4
1,683,228	-		MMJJ_RS09100	0.27	-1.6
1,683,369	-		MMJJ_RS09100	0.36	-2.9
1,683,369	-		MMJJ_RS09100	0.36	-0.7
1,683,372	-		MMJJ_RS09100	0.37	-0.8
1,683,398	-		MMJJ_RS09100	0.38	-0.8
1,683,479	-		MMJJ_RS09100	0.43	-1.0
1,683,480	+		MMJJ_RS09100	0.43	-4.1
1,683,483	-		MMJJ_RS09100	0.44	-1.4
1,683,498	-		MMJJ_RS09100	0.45	-2.8
1,683,537	-		MMJJ_RS09100	0.47	-2.2
1,683,541	+		MMJJ_RS09100	0.47	-0.7
1,683,547	+		MMJJ_RS09100	0.48	-1.0
1,683,604	-		MMJJ_RS09100	0.51	-1.0
1,683,707	-		MMJJ_RS09100	0.58	-1.9
1,683,760	+		MMJJ_RS09100	0.61	-2.3
1,683,791	-		MMJJ_RS09100	0.63	-3.0
1,683,840	-		MMJJ_RS09100	0.66	-2.0
1,683,851	-		MMJJ_RS09100	0.67	-1.6
1,683,852	+		MMJJ_RS09100	0.67	-1.8
1,683,853	-		MMJJ_RS09100	0.67	-2.1
1,683,854	+		MMJJ_RS09100	0.67	+1.0
1,683,890	-		MMJJ_RS09100	0.69	-0.7
1,683,890	-		MMJJ_RS09100	0.69	-2.0
1,683,900	-		MMJJ_RS09100	0.70	-3.4
1,683,900	-		MMJJ_RS09100	0.70	-1.0
1,683,902	-		MMJJ_RS09100	0.70	-2.3
1,683,902	-		MMJJ_RS09100	0.70	-0.9
1,683,945	+		MMJJ_RS09100	0.73	-1.1
1,683,976	-		MMJJ_RS09100	0.75	-1.8
1,683,977	+		MMJJ_RS09100	0.75	-1.0
1,684,174	+		MMJJ_RS09100	0.88	-0.3
1,684,219	+				-1.6
1,684,237	-				-2.2
1,684,281	+				-2.0
1,684,284	-				-0.2
1,684,285	+				-2.0
1,684,316	-				-3.3
1,684,317	+				-0.3
1,684,319	-				-1.4
1,684,319	-				-1.1
1,684,319	-				-1.5
1,684,320	+				-1.3
1,684,320	+				+0.2
1,684,320	+				-0.2
1,684,321	-				+0.5
1,684,321	-				+0.3
1,684,321	-				-1.6
1,684,321	-				-0.2
1,684,321	-				+0.9
1,684,322	+				-0.8
1,684,322	+				-1.1
1,684,322	+				+0.6
1,684,322	+				+0.0
1,684,322	+				+0.4
1,684,322	+				-0.4
1,684,325	-				-0.7
1,684,325	-				-0.5
1,684,326	+				-0.0
1,684,326	+				+0.1
1,684,408	+				+0.2
1,684,429	-				-0.2
1,684,429	-				-0.5
1,684,430	+				-0.2
1,684,452	-				-0.5
1,684,530	+				+0.3
1,684,557	-				+0.1
1,684,557	-				+0.4
1,684,558	+				+1.0
1,684,558	+				-0.2
1,684,608	-				+0.2
1,684,608	-				+0.1
1,684,609	+				+0.1
1,684,632	+		MMJJ_RS09105	0.11	-0.5
1,684,659	-		MMJJ_RS09105	0.13	+0.0
1,684,660	+		MMJJ_RS09105	0.13	+0.5
1,684,660	+		MMJJ_RS09105	0.13	+0.7
1,684,702	-		MMJJ_RS09105	0.18	-0.1
1,684,714	-		MMJJ_RS09105	0.19	-0.2
1,684,715	+		MMJJ_RS09105	0.19	+1.0
1,684,715	+		MMJJ_RS09105	0.19	+0.4
1,684,735	-		MMJJ_RS09105	0.21	+0.4
1,684,772	-		MMJJ_RS09105	0.25	+0.5
1,684,773	+		MMJJ_RS09105	0.25	+0.9
1,684,793	+		MMJJ_RS09105	0.27	+0.1
1,684,799	-		MMJJ_RS09105	0.28	+0.2
1,684,800	+		MMJJ_RS09105	0.28	+1.5
1,684,800	+		MMJJ_RS09105	0.28	-0.7
1,684,807	+		MMJJ_RS09105	0.29	+0.1
1,684,817	+		MMJJ_RS09105	0.30	-0.7
1,684,927	-		MMJJ_RS09105	0.41	-0.5
1,684,927	-		MMJJ_RS09105	0.41	+0.2
1,684,953	-		MMJJ_RS09105	0.44	+1.4
1,684,986	+		MMJJ_RS09105	0.47	-0.8
1,684,998	-		MMJJ_RS09105	0.48	-0.7
1,684,999	+		MMJJ_RS09105	0.49	+0.4
1,685,024	-		MMJJ_RS09105	0.51	-0.2
1,685,025	+		MMJJ_RS09105	0.51	-0.6
1,685,039	+		MMJJ_RS09105	0.53	-1.0
1,685,047	-		MMJJ_RS09105	0.54	-0.2
1,685,060	+		MMJJ_RS09105	0.55	+0.2
1,685,069	+		MMJJ_RS09105	0.56	+0.7
1,685,087	-		MMJJ_RS09105	0.58	-0.4
1,685,108	-		MMJJ_RS09105	0.60	-0.0
1,685,119	-		MMJJ_RS09105	0.61	-0.5
1,685,120	+		MMJJ_RS09105	0.61	-0.8
1,685,120	+		MMJJ_RS09105	0.61	+0.3
1,685,120	+		MMJJ_RS09105	0.61	+2.1
1,685,153	-		MMJJ_RS09105	0.64	+0.6
1,685,154	+		MMJJ_RS09105	0.65	+0.4
1,685,177	+		MMJJ_RS09105	0.67	+3.3
1,685,180	+		MMJJ_RS09105	0.67	-0.1
1,685,180	+		MMJJ_RS09105	0.67	-0.1
1,685,213	+		MMJJ_RS09105	0.71	+0.5
1,685,214	-		MMJJ_RS09105	0.71	+0.6
1,685,214	-		MMJJ_RS09105	0.71	-1.4
1,685,214	-		MMJJ_RS09105	0.71	+0.3
1,685,214	-		MMJJ_RS09105	0.71	+0.6
1,685,214	-		MMJJ_RS09105	0.71	-0.2
1,685,214	-		MMJJ_RS09105	0.71	+0.1
1,685,214	-		MMJJ_RS09105	0.71	-1.8
1,685,214	-		MMJJ_RS09105	0.71	+0.4
1,685,214	-		MMJJ_RS09105	0.71	-0.0
1,685,215	+		MMJJ_RS09105	0.71	-0.4
1,685,215	+		MMJJ_RS09105	0.71	+0.4
1,685,215	+		MMJJ_RS09105	0.71	-0.6
1,685,215	+		MMJJ_RS09105	0.71	-0.3
1,685,215	+		MMJJ_RS09105	0.71	-0.0
1,685,215	+		MMJJ_RS09105	0.71	+0.1
1,685,215	+		MMJJ_RS09105	0.71	+0.5
1,685,215	+		MMJJ_RS09105	0.71	+0.2
1,685,226	+		MMJJ_RS09105	0.72	+0.1
1,685,232	-		MMJJ_RS09105	0.73	-0.4
1,685,233	+		MMJJ_RS09105	0.73	-0.4
1,685,235	-		MMJJ_RS09105	0.73	+0.7
1,685,235	-		MMJJ_RS09105	0.73	-0.4
1,685,236	+		MMJJ_RS09105	0.73	-0.0
1,685,236	+		MMJJ_RS09105	0.73	+0.0
1,685,243	+		MMJJ_RS09105	0.74	+0.7
1,685,273	+		MMJJ_RS09105	0.77	+0.8
1,685,278	-		MMJJ_RS09105	0.77	+0.1
1,685,291	+		MMJJ_RS09105	0.79	-0.0
1,685,320	-		MMJJ_RS09105	0.82	-0.0