Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06087

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06086 and H281DRAFT_06087 are separated by 432 nucleotidesH281DRAFT_06087 and H281DRAFT_06088 are separated by 245 nucleotides H281DRAFT_06086: H281DRAFT_06086 - Osmotically-inducible protein OsmY, contains BON domain, at 104,230 to 104,883 _06086 H281DRAFT_06087: H281DRAFT_06087 - Uncharacterized membrane protein, at 105,316 to 105,846 _06087 H281DRAFT_06088: H281DRAFT_06088 - Nucleoside-diphosphate-sugar epimerase, at 106,092 to 106,730 _06088 Position (kb) 105 106Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 104.503 kb on - strand, within H281DRAFT_06086at 105.276 kb on - strandat 105.455 kb on + strand, within H281DRAFT_06087at 105.628 kb on + strand, within H281DRAFT_06087at 105.761 kb on + strand, within H281DRAFT_06087at 106.135 kb on + strandat 106.283 kb on + strand, within H281DRAFT_06088at 106.284 kb on - strand, within H281DRAFT_06088at 106.465 kb on - strand, within H281DRAFT_06088at 106.519 kb on - strand, within H281DRAFT_06088at 106.548 kb on - strand, within H281DRAFT_06088

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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104,503 - H281DRAFT_06086 0.42 +3.9
105,276 - -1.9
105,455 + H281DRAFT_06087 0.26 +0.1
105,628 + H281DRAFT_06087 0.59 +0.5
105,761 + H281DRAFT_06087 0.84 +0.1
106,135 + +0.0
106,283 + H281DRAFT_06088 0.30 -0.4
106,284 - H281DRAFT_06088 0.30 +0.1
106,465 - H281DRAFT_06088 0.58 -0.7
106,519 - H281DRAFT_06088 0.67 -0.7
106,548 - H281DRAFT_06088 0.71 +0.6

Or see this region's nucleotide sequence