Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05976

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05975 and H281DRAFT_05976 overlap by 4 nucleotidesH281DRAFT_05976 and H281DRAFT_05977 are separated by 363 nucleotides H281DRAFT_05975: H281DRAFT_05975 - carbon-monoxide dehydrogenase large subunit, at 116,440 to 118,881 _05975 H281DRAFT_05976: H281DRAFT_05976 - D-galactonate transporter, at 118,878 to 120,215 _05976 H281DRAFT_05977: H281DRAFT_05977 - Enoyl-CoA hydratase/carnithine racemase, at 120,579 to 121,343 _05977 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -1 0 1at 118.135 kb on - strand, within H281DRAFT_05975at 118.730 kb on + strandat 119.406 kb on - strand, within H281DRAFT_05976at 119.435 kb on - strand, within H281DRAFT_05976at 119.841 kb on + strand, within H281DRAFT_05976at 119.842 kb on - strand, within H281DRAFT_05976at 119.846 kb on - strand, within H281DRAFT_05976at 119.925 kb on - strand, within H281DRAFT_05976at 120.082 kb on + strandat 120.858 kb on + strand, within H281DRAFT_05977

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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118,135 - H281DRAFT_05975 0.69 -0.2
118,730 + -1.4
119,406 - H281DRAFT_05976 0.39 -0.8
119,435 - H281DRAFT_05976 0.42 -0.9
119,841 + H281DRAFT_05976 0.72 -0.0
119,842 - H281DRAFT_05976 0.72 -0.4
119,846 - H281DRAFT_05976 0.72 -0.3
119,925 - H281DRAFT_05976 0.78 -0.2
120,082 + -1.5
120,858 + H281DRAFT_05977 0.36 -0.1

Or see this region's nucleotide sequence