Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05484

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05484 and H281DRAFT_05485 are separated by 265 nucleotides H281DRAFT_05484: H281DRAFT_05484 - Nucleotide-binding universal stress protein, UspA family, at 63,946 to 64,428 _05484 H281DRAFT_05485: H281DRAFT_05485 - Group II intron, maturase-specific domain, at 64,694 to 65,425 _05485 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.100 kb on + strandat 63.266 kb on + strandat 63.338 kb on + strandat 63.339 kb on - strandat 63.750 kb on - strandat 63.750 kb on - strandat 63.912 kb on + strandat 64.230 kb on + strand, within H281DRAFT_05484at 64.233 kb on - strand, within H281DRAFT_05484at 64.233 kb on - strand, within H281DRAFT_05484at 64.337 kb on + strand, within H281DRAFT_05484at 64.413 kb on + strandat 64.427 kb on - strandat 64.489 kb on + strandat 64.489 kb on + strandat 64.938 kb on - strand, within H281DRAFT_05485at 65.225 kb on - strand, within H281DRAFT_05485at 65.225 kb on - strand, within H281DRAFT_05485at 65.229 kb on - strand, within H281DRAFT_05485at 65.296 kb on + strand, within H281DRAFT_05485at 65.420 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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63,100 + -2.7
63,266 + +1.9
63,338 + +2.2
63,339 - -0.3
63,750 - -1.5
63,750 - +0.2
63,912 + -1.6
64,230 + H281DRAFT_05484 0.59 -0.9
64,233 - H281DRAFT_05484 0.59 -0.0
64,233 - H281DRAFT_05484 0.59 +0.1
64,337 + H281DRAFT_05484 0.81 +1.7
64,413 + -0.1
64,427 - +3.5
64,489 + +1.7
64,489 + +0.3
64,938 - H281DRAFT_05485 0.33 -0.3
65,225 - H281DRAFT_05485 0.73 -0.3
65,225 - H281DRAFT_05485 0.73 +0.9
65,229 - H281DRAFT_05485 0.73 +0.5
65,296 + H281DRAFT_05485 0.82 -1.8
65,420 + +0.7

Or see this region's nucleotide sequence