Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05309 and H281DRAFT_05310 are separated by 590 nucleotides H281DRAFT_05310 and H281DRAFT_05311 are separated by 26 nucleotides
H281DRAFT_05309: H281DRAFT_05309 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein, at 55,076 to 56,488
_05309
H281DRAFT_05310: H281DRAFT_05310 - uronate dehydrogenase, at 57,079 to 57,921
_05310
H281DRAFT_05311: H281DRAFT_05311 - MFS transporter, ACS family, hexuronate transporter, at 57,948 to 59,246
_05311
Position (kb) 57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.594 kb on - strand at 56.759 kb on - strand at 56.815 kb on + strand at 56.816 kb on - strand at 56.939 kb on + strand at 56.939 kb on + strand at 56.939 kb on + strand at 56.939 kb on + strand at 56.939 kb on + strand at 56.939 kb on + strand at 56.940 kb on - strand at 56.940 kb on - strand at 57.038 kb on + strand at 57.038 kb on + strand at 57.078 kb on + strand at 57.359 kb on - strand, within H281DRAFT_05310 at 57.427 kb on + strand, within H281DRAFT_05310 at 57.427 kb on + strand, within H281DRAFT_05310 at 57.428 kb on - strand, within H281DRAFT_05310 at 57.524 kb on - strand, within H281DRAFT_05310 at 57.524 kb on - strand, within H281DRAFT_05310 at 57.745 kb on + strand, within H281DRAFT_05310 at 57.745 kb on + strand, within H281DRAFT_05310 at 57.773 kb on - strand, within H281DRAFT_05310 at 57.773 kb on - strand, within H281DRAFT_05310 at 57.935 kb on - strand at 57.935 kb on - strand at 57.955 kb on + strand at 57.956 kb on - strand at 58.012 kb on - strand at 58.012 kb on - strand at 58.497 kb on + strand, within H281DRAFT_05311 at 58.498 kb on - strand, within H281DRAFT_05311 at 58.545 kb on + strand, within H281DRAFT_05311 at 58.546 kb on - strand, within H281DRAFT_05311 at 58.547 kb on + strand, within H281DRAFT_05311 at 58.547 kb on + strand, within H281DRAFT_05311 at 58.747 kb on - strand, within H281DRAFT_05311 at 58.747 kb on - strand, within H281DRAFT_05311 at 58.747 kb on - strand, within H281DRAFT_05311 at 58.747 kb on - strand, within H281DRAFT_05311 at 58.747 kb on - strand, within H281DRAFT_05311 at 58.817 kb on + strand at 58.818 kb on - strand, within H281DRAFT_05311 at 58.818 kb on - strand, within H281DRAFT_05311 at 58.821 kb on + strand, within H281DRAFT_05311 at 58.822 kb on - strand, within H281DRAFT_05311 at 58.921 kb on - strand, within H281DRAFT_05311
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 56,594 - -3.5 56,759 - +0.7 56,815 + +0.2 56,816 - -1.0 56,939 + +0.5 56,939 + -0.1 56,939 + -0.2 56,939 + +0.0 56,939 + +0.9 56,939 + -0.6 56,940 - -0.1 56,940 - -0.8 57,038 + -1.3 57,038 + +0.7 57,078 + +1.3 57,359 - H281DRAFT_05310 0.33 -0.1 57,427 + H281DRAFT_05310 0.41 +0.3 57,427 + H281DRAFT_05310 0.41 -1.0 57,428 - H281DRAFT_05310 0.41 +0.6 57,524 - H281DRAFT_05310 0.53 -0.1 57,524 - H281DRAFT_05310 0.53 -1.0 57,745 + H281DRAFT_05310 0.79 +0.8 57,745 + H281DRAFT_05310 0.79 -0.6 57,773 - H281DRAFT_05310 0.82 -1.0 57,773 - H281DRAFT_05310 0.82 +0.0 57,935 - -1.5 57,935 - -0.3 57,955 + +1.2 57,956 - -0.7 58,012 - +1.4 58,012 - +0.2 58,497 + H281DRAFT_05311 0.42 +1.0 58,498 - H281DRAFT_05311 0.42 -0.4 58,545 + H281DRAFT_05311 0.46 +0.8 58,546 - H281DRAFT_05311 0.46 +2.5 58,547 + H281DRAFT_05311 0.46 +0.0 58,547 + H281DRAFT_05311 0.46 +0.1 58,747 - H281DRAFT_05311 0.62 -1.3 58,747 - H281DRAFT_05311 0.62 +0.5 58,747 - H281DRAFT_05311 0.62 -2.8 58,747 - H281DRAFT_05311 0.62 -0.8 58,747 - H281DRAFT_05311 0.62 -0.3 58,817 + +2.4 58,818 - H281DRAFT_05311 0.67 -0.1 58,818 - H281DRAFT_05311 0.67 -1.1 58,821 + H281DRAFT_05311 0.67 +0.1 58,822 - H281DRAFT_05311 0.67 -0.2 58,921 - H281DRAFT_05311 0.75 +0.8
Or see this region's nucleotide sequence