Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05052 and H281DRAFT_05053 are separated by 94 nucleotides H281DRAFT_05053 and H281DRAFT_05054 are separated by 115 nucleotides H281DRAFT_05054 and H281DRAFT_05055 are separated by 340 nucleotides
H281DRAFT_05052: H281DRAFT_05052 - Predicted arabinose efflux permease, MFS family, at 242,785 to 243,963
_05052
H281DRAFT_05053: H281DRAFT_05053 - protein of unknown function (DUF3331), at 244,058 to 244,501
_05053
H281DRAFT_05054: H281DRAFT_05054 - Predicted periplasmic or secreted lipoprotein, at 244,617 to 245,000
_05054
H281DRAFT_05055: H281DRAFT_05055 - Signal transduction histidine kinase, at 245,341 to 246,396
_05055
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1
2 at 243.920 kb on - strand at 244.517 kb on - strand at 244.531 kb on + strand at 244.615 kb on + strand at 244.639 kb on - strand at 244.701 kb on - strand, within H281DRAFT_05054 at 244.939 kb on + strand, within H281DRAFT_05054 at 244.940 kb on - strand, within H281DRAFT_05054 at 245.041 kb on - strand at 245.042 kb on + strand at 245.043 kb on - strand at 245.075 kb on + strand at 245.076 kb on - strand at 245.076 kb on - strand at 245.076 kb on - strand at 245.095 kb on - strand at 245.097 kb on + strand at 245.145 kb on + strand at 245.499 kb on - strand, within H281DRAFT_05055 at 245.558 kb on - strand, within H281DRAFT_05055 at 245.953 kb on + strand, within H281DRAFT_05055 at 245.954 kb on - strand, within H281DRAFT_05055
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 243,920 - -0.9 244,517 - +2.0 244,531 + +1.2 244,615 + +0.4 244,639 - +2.0 244,701 - H281DRAFT_05054 0.22 +1.2 244,939 + H281DRAFT_05054 0.84 -0.9 244,940 - H281DRAFT_05054 0.84 +1.0 245,041 - +0.2 245,042 + -0.3 245,043 - +1.3 245,075 + -0.8 245,076 - +1.5 245,076 - +1.0 245,076 - -0.3 245,095 - +1.8 245,097 + -0.2 245,145 + +1.8 245,499 - H281DRAFT_05055 0.15 +0.4 245,558 - H281DRAFT_05055 0.21 -0.3 245,953 + H281DRAFT_05055 0.58 +0.5 245,954 - H281DRAFT_05055 0.58 -0.6
Or see this region's nucleotide sequence