Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04094 and H281DRAFT_04095 are separated by 246 nucleotides H281DRAFT_04095 and H281DRAFT_04096 are separated by 133 nucleotides H281DRAFT_04096 and H281DRAFT_04097 are separated by 207 nucleotides H281DRAFT_04097 and H281DRAFT_04098 are separated by 42 nucleotides
H281DRAFT_04094: H281DRAFT_04094 - peptide/nickel transport system ATP-binding protein, at 200,909 to 203,143
_04094
H281DRAFT_04095: H281DRAFT_04095 - hypothetical protein, at 203,390 to 203,872
_04095
H281DRAFT_04096: H281DRAFT_04096 - Aldo/keto reductase, at 204,006 to 204,851
_04096
H281DRAFT_04097: H281DRAFT_04097 - transcriptional regulator, GntR family, at 205,059 to 205,805
_04097
H281DRAFT_04098: H281DRAFT_04098 - Predicted acyl-CoA transferases/carnitine dehydratase, at 205,848 to 207,266
_04098
Position (kb) 204
205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 203.035 kb on - strand at 203.147 kb on + strand at 203.148 kb on - strand at 203.148 kb on - strand at 203.322 kb on - strand at 203.322 kb on - strand at 203.322 kb on - strand at 203.355 kb on - strand at 203.364 kb on + strand at 203.365 kb on - strand at 203.374 kb on - strand at 203.926 kb on + strand at 203.926 kb on + strand at 203.983 kb on + strand at 203.983 kb on + strand at 204.050 kb on - strand at 204.268 kb on + strand, within H281DRAFT_04096 at 204.269 kb on - strand, within H281DRAFT_04096 at 204.344 kb on - strand, within H281DRAFT_04096 at 204.518 kb on - strand, within H281DRAFT_04096 at 204.518 kb on - strand, within H281DRAFT_04096 at 204.601 kb on + strand, within H281DRAFT_04096 at 204.682 kb on + strand, within H281DRAFT_04096 at 204.696 kb on - strand, within H281DRAFT_04096 at 204.945 kb on + strand at 205.004 kb on + strand at 205.046 kb on + strand at 205.051 kb on + strand at 205.052 kb on - strand at 205.247 kb on + strand, within H281DRAFT_04097 at 205.247 kb on + strand, within H281DRAFT_04097 at 205.248 kb on - strand, within H281DRAFT_04097 at 205.324 kb on - strand, within H281DRAFT_04097 at 205.382 kb on + strand, within H281DRAFT_04097 at 205.439 kb on - strand, within H281DRAFT_04097 at 205.547 kb on - strand, within H281DRAFT_04097 at 205.547 kb on - strand, within H281DRAFT_04097 at 205.581 kb on + strand, within H281DRAFT_04097 at 205.581 kb on + strand, within H281DRAFT_04097 at 205.588 kb on - strand, within H281DRAFT_04097 at 205.588 kb on - strand, within H281DRAFT_04097 at 205.588 kb on - strand, within H281DRAFT_04097 at 205.721 kb on + strand, within H281DRAFT_04097 at 205.722 kb on - strand, within H281DRAFT_04097 at 205.758 kb on + strand at 205.758 kb on + strand at 205.758 kb on + strand at 205.776 kb on + strand at 205.776 kb on + strand at 205.776 kb on + strand at 205.777 kb on - strand at 205.804 kb on - strand at 205.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 203,035 - -0.2 203,147 + +0.7 203,148 - +1.4 203,148 - -0.9 203,322 - +1.0 203,322 - -0.8 203,322 - +0.4 203,355 - +0.7 203,364 + -0.8 203,365 - -0.1 203,374 - +0.1 203,926 + +0.2 203,926 + -2.0 203,983 + -0.8 203,983 + -1.0 204,050 - -0.0 204,268 + H281DRAFT_04096 0.31 +0.6 204,269 - H281DRAFT_04096 0.31 -0.9 204,344 - H281DRAFT_04096 0.40 -0.0 204,518 - H281DRAFT_04096 0.61 +0.0 204,518 - H281DRAFT_04096 0.61 +4.5 204,601 + H281DRAFT_04096 0.70 -1.2 204,682 + H281DRAFT_04096 0.80 +0.2 204,696 - H281DRAFT_04096 0.82 +0.2 204,945 + +0.5 205,004 + -2.0 205,046 + +1.8 205,051 + +0.0 205,052 - -0.2 205,247 + H281DRAFT_04097 0.25 -0.7 205,247 + H281DRAFT_04097 0.25 -0.7 205,248 - H281DRAFT_04097 0.25 -1.1 205,324 - H281DRAFT_04097 0.35 -2.2 205,382 + H281DRAFT_04097 0.43 -2.3 205,439 - H281DRAFT_04097 0.51 -2.1 205,547 - H281DRAFT_04097 0.65 -0.3 205,547 - H281DRAFT_04097 0.65 +0.4 205,581 + H281DRAFT_04097 0.70 -0.1 205,581 + H281DRAFT_04097 0.70 +0.1 205,588 - H281DRAFT_04097 0.71 +0.2 205,588 - H281DRAFT_04097 0.71 +0.7 205,588 - H281DRAFT_04097 0.71 +0.8 205,721 + H281DRAFT_04097 0.89 -3.0 205,722 - H281DRAFT_04097 0.89 +0.0 205,758 + -0.6 205,758 + +0.0 205,758 + +1.4 205,776 + -1.2 205,776 + -0.2 205,776 + +0.1 205,777 - -0.7 205,804 - -0.4 205,829 - -0.2
Or see this region's nucleotide sequence