Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03959 and H281DRAFT_03960 are separated by 124 nucleotides H281DRAFT_03960 and H281DRAFT_03961 are separated by 410 nucleotides
H281DRAFT_03959: H281DRAFT_03959 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 62,204 to 63,583
_03959
H281DRAFT_03960: H281DRAFT_03960 - disulfide bond formation protein DsbB, at 63,708 to 64,217
_03960
H281DRAFT_03961: H281DRAFT_03961 - xanthine dehydrogenase, small subunit (EC 1.17.1.4) <small>(from data)</small>, at 64,628 to 66,256
_03961
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.993 kb on + strand, within H281DRAFT_03959 at 62.993 kb on + strand, within H281DRAFT_03959 at 62.993 kb on + strand, within H281DRAFT_03959 at 62.993 kb on + strand, within H281DRAFT_03959 at 62.994 kb on - strand, within H281DRAFT_03959 at 62.994 kb on - strand, within H281DRAFT_03959 at 62.994 kb on - strand, within H281DRAFT_03959 at 63.149 kb on + strand, within H281DRAFT_03959 at 63.149 kb on + strand, within H281DRAFT_03959 at 63.150 kb on - strand, within H281DRAFT_03959 at 63.192 kb on - strand, within H281DRAFT_03959 at 63.192 kb on - strand, within H281DRAFT_03959 at 63.192 kb on - strand, within H281DRAFT_03959 at 63.637 kb on + strand at 63.687 kb on + strand at 63.688 kb on - strand at 64.233 kb on + strand at 64.251 kb on + strand at 64.251 kb on + strand at 64.306 kb on + strand at 64.307 kb on - strand at 64.592 kb on - strand at 64.607 kb on + strand at 64.613 kb on + strand at 64.637 kb on + strand at 64.638 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 62,993 + H281DRAFT_03959 0.57 +1.8 62,993 + H281DRAFT_03959 0.57 +2.2 62,993 + H281DRAFT_03959 0.57 +2.2 62,993 + H281DRAFT_03959 0.57 +0.2 62,994 - H281DRAFT_03959 0.57 +1.3 62,994 - H281DRAFT_03959 0.57 -2.2 62,994 - H281DRAFT_03959 0.57 -0.3 63,149 + H281DRAFT_03959 0.68 +0.2 63,149 + H281DRAFT_03959 0.68 -0.4 63,150 - H281DRAFT_03959 0.69 +0.3 63,192 - H281DRAFT_03959 0.72 +0.1 63,192 - H281DRAFT_03959 0.72 -0.0 63,192 - H281DRAFT_03959 0.72 -0.0 63,637 + -0.3 63,687 + -2.3 63,688 - -2.4 64,233 + +0.0 64,251 + -0.9 64,251 + -1.3 64,306 + +0.3 64,307 - +0.3 64,592 - +2.1 64,607 + -0.4 64,613 + +0.3 64,637 + +1.0 64,638 - +0.1
Or see this region's nucleotide sequence