Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03730 and H281DRAFT_03731 overlap by 1 nucleotides H281DRAFT_03731 and H281DRAFT_03732 overlap by 11 nucleotides H281DRAFT_03732 and H281DRAFT_03733 overlap by 4 nucleotides
H281DRAFT_03730: H281DRAFT_03730 - Predicted small integral membrane protein, at 245,117 to 245,398
_03730
H281DRAFT_03731: H281DRAFT_03731 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 245,398 to 246,210
_03731
H281DRAFT_03732: H281DRAFT_03732 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 246,200 to 247,096
_03732
H281DRAFT_03733: H281DRAFT_03733 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 247,093 to 248,217
_03733
Position (kb) 246
247
248 Strain fitness (log2 ratio) -1
0
1 at 245.456 kb on - strand at 245.702 kb on + strand, within H281DRAFT_03731 at 245.808 kb on - strand, within H281DRAFT_03731 at 245.993 kb on + strand, within H281DRAFT_03731 at 245.994 kb on - strand, within H281DRAFT_03731 at 246.012 kb on - strand, within H281DRAFT_03731 at 246.050 kb on + strand, within H281DRAFT_03731 at 246.097 kb on - strand, within H281DRAFT_03731 at 246.163 kb on - strand at 246.165 kb on - strand at 246.672 kb on + strand, within H281DRAFT_03732 at 246.885 kb on - strand, within H281DRAFT_03732 at 247.262 kb on + strand, within H281DRAFT_03733
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 245,456 - -1.6 245,702 + H281DRAFT_03731 0.37 +0.7 245,808 - H281DRAFT_03731 0.50 +0.4 245,993 + H281DRAFT_03731 0.73 +0.5 245,994 - H281DRAFT_03731 0.73 +0.2 246,012 - H281DRAFT_03731 0.76 +1.7 246,050 + H281DRAFT_03731 0.80 +0.1 246,097 - H281DRAFT_03731 0.86 +0.8 246,163 - -0.0 246,165 - +0.5 246,672 + H281DRAFT_03732 0.53 -0.1 246,885 - H281DRAFT_03732 0.76 -0.3 247,262 + H281DRAFT_03733 0.15 +0.2
Or see this region's nucleotide sequence