Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03526 and H281DRAFT_03527 are separated by 269 nucleotides H281DRAFT_03527 and H281DRAFT_03528 are separated by 39 nucleotides H281DRAFT_03528 and H281DRAFT_03529 are separated by 78 nucleotides H281DRAFT_03529 and H281DRAFT_03530 are separated by 39 nucleotides
H281DRAFT_03526: H281DRAFT_03526 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 24,318 to 25,940
_03526
H281DRAFT_03527: H281DRAFT_03527 - uncharacterized domain 1-containing protein, at 26,210 to 26,644
_03527
H281DRAFT_03528: H281DRAFT_03528 - ureidoglycolate lyase, at 26,684 to 27,532
_03528
H281DRAFT_03529: H281DRAFT_03529 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 27,611 to 28,354
_03529
H281DRAFT_03530: H281DRAFT_03530 - L-fuconolactonase, at 28,394 to 29,236
_03530
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.863 kb on + strand at 25.864 kb on - strand at 25.975 kb on - strand at 25.975 kb on - strand at 25.975 kb on - strand at 26.035 kb on + strand at 26.036 kb on - strand at 26.099 kb on + strand at 26.139 kb on - strand at 26.148 kb on - strand at 26.221 kb on - strand at 26.379 kb on - strand, within H281DRAFT_03527 at 26.379 kb on - strand, within H281DRAFT_03527 at 26.448 kb on - strand, within H281DRAFT_03527 at 26.448 kb on - strand, within H281DRAFT_03527 at 26.460 kb on - strand, within H281DRAFT_03527 at 26.510 kb on + strand, within H281DRAFT_03527 at 26.510 kb on + strand, within H281DRAFT_03527 at 26.511 kb on - strand, within H281DRAFT_03527 at 26.697 kb on + strand at 26.698 kb on - strand at 26.763 kb on + strand at 26.763 kb on + strand at 26.764 kb on - strand at 26.856 kb on + strand, within H281DRAFT_03528 at 26.856 kb on + strand, within H281DRAFT_03528 at 26.856 kb on + strand, within H281DRAFT_03528 at 26.856 kb on + strand, within H281DRAFT_03528 at 26.856 kb on + strand, within H281DRAFT_03528 at 26.857 kb on - strand, within H281DRAFT_03528 at 27.085 kb on - strand, within H281DRAFT_03528 at 27.096 kb on + strand, within H281DRAFT_03528 at 27.096 kb on + strand, within H281DRAFT_03528 at 27.097 kb on - strand, within H281DRAFT_03528 at 27.123 kb on + strand, within H281DRAFT_03528 at 27.123 kb on + strand, within H281DRAFT_03528 at 27.123 kb on + strand, within H281DRAFT_03528 at 27.124 kb on - strand, within H281DRAFT_03528 at 27.124 kb on - strand, within H281DRAFT_03528 at 27.124 kb on - strand, within H281DRAFT_03528 at 27.295 kb on - strand, within H281DRAFT_03528 at 27.447 kb on - strand, within H281DRAFT_03528 at 27.447 kb on - strand, within H281DRAFT_03528 at 27.571 kb on + strand at 27.571 kb on + strand at 27.571 kb on + strand at 27.571 kb on + strand at 27.605 kb on + strand at 27.605 kb on + strand at 27.848 kb on - strand, within H281DRAFT_03529 at 27.854 kb on + strand, within H281DRAFT_03529 at 27.854 kb on + strand, within H281DRAFT_03529 at 27.854 kb on + strand, within H281DRAFT_03529 at 27.854 kb on + strand, within H281DRAFT_03529 at 27.924 kb on + strand, within H281DRAFT_03529 at 27.924 kb on + strand, within H281DRAFT_03529 at 27.925 kb on - strand, within H281DRAFT_03529 at 27.973 kb on + strand, within H281DRAFT_03529 at 27.973 kb on + strand, within H281DRAFT_03529 at 27.974 kb on - strand, within H281DRAFT_03529 at 27.974 kb on - strand, within H281DRAFT_03529 at 27.974 kb on - strand, within H281DRAFT_03529 at 27.974 kb on - strand, within H281DRAFT_03529 at 27.974 kb on - strand, within H281DRAFT_03529 at 27.974 kb on - strand, within H281DRAFT_03529 at 28.035 kb on + strand, within H281DRAFT_03529 at 28.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 25,863 + +0.1 25,864 - +0.4 25,975 - -0.2 25,975 - +0.2 25,975 - -0.5 26,035 + +0.9 26,036 - +0.5 26,099 + -1.4 26,139 - +0.1 26,148 - -0.5 26,221 - +0.3 26,379 - H281DRAFT_03527 0.39 -0.1 26,379 - H281DRAFT_03527 0.39 -0.2 26,448 - H281DRAFT_03527 0.55 -0.3 26,448 - H281DRAFT_03527 0.55 +0.5 26,460 - H281DRAFT_03527 0.57 -1.0 26,510 + H281DRAFT_03527 0.69 +0.1 26,510 + H281DRAFT_03527 0.69 +0.5 26,511 - H281DRAFT_03527 0.69 -1.2 26,697 + -0.2 26,698 - -0.9 26,763 + +0.1 26,763 + -0.4 26,764 - +1.0 26,856 + H281DRAFT_03528 0.20 +0.3 26,856 + H281DRAFT_03528 0.20 -0.4 26,856 + H281DRAFT_03528 0.20 -0.1 26,856 + H281DRAFT_03528 0.20 +0.6 26,856 + H281DRAFT_03528 0.20 +0.1 26,857 - H281DRAFT_03528 0.20 -0.9 27,085 - H281DRAFT_03528 0.47 +0.4 27,096 + H281DRAFT_03528 0.49 +0.7 27,096 + H281DRAFT_03528 0.49 +0.2 27,097 - H281DRAFT_03528 0.49 -0.5 27,123 + H281DRAFT_03528 0.52 +0.8 27,123 + H281DRAFT_03528 0.52 -0.3 27,123 + H281DRAFT_03528 0.52 -0.2 27,124 - H281DRAFT_03528 0.52 +0.0 27,124 - H281DRAFT_03528 0.52 +0.2 27,124 - H281DRAFT_03528 0.52 -0.2 27,295 - H281DRAFT_03528 0.72 +1.0 27,447 - H281DRAFT_03528 0.90 +0.2 27,447 - H281DRAFT_03528 0.90 +0.2 27,571 + +0.8 27,571 + +0.6 27,571 + -0.1 27,571 + +0.6 27,605 + +0.4 27,605 + -1.7 27,848 - H281DRAFT_03529 0.32 +0.1 27,854 + H281DRAFT_03529 0.33 +0.2 27,854 + H281DRAFT_03529 0.33 -2.4 27,854 + H281DRAFT_03529 0.33 +0.6 27,854 + H281DRAFT_03529 0.33 +0.1 27,924 + H281DRAFT_03529 0.42 -1.0 27,924 + H281DRAFT_03529 0.42 +2.7 27,925 - H281DRAFT_03529 0.42 +0.3 27,973 + H281DRAFT_03529 0.49 -0.4 27,973 + H281DRAFT_03529 0.49 -0.9 27,974 - H281DRAFT_03529 0.49 +1.3 27,974 - H281DRAFT_03529 0.49 -0.4 27,974 - H281DRAFT_03529 0.49 -1.5 27,974 - H281DRAFT_03529 0.49 -1.0 27,974 - H281DRAFT_03529 0.49 -0.1 27,974 - H281DRAFT_03529 0.49 -0.5 28,035 + H281DRAFT_03529 0.57 -0.6 28,378 - -0.6
Or see this region's nucleotide sequence