Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03376 and H281DRAFT_03377 are separated by 9 nucleotides H281DRAFT_03377 and H281DRAFT_03378 are separated by 67 nucleotides
H281DRAFT_03376: H281DRAFT_03376 - 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase, at 441,677 to 442,684
_03376
H281DRAFT_03377: H281DRAFT_03377 - D-threo-aldose 1-dehydrogenase, at 442,694 to 443,752
_03377
H281DRAFT_03378: H281DRAFT_03378 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 443,820 to 444,767
_03378
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 441.930 kb on + strand, within H281DRAFT_03376 at 442.002 kb on - strand, within H281DRAFT_03376 at 442.330 kb on - strand, within H281DRAFT_03376 at 442.537 kb on - strand, within H281DRAFT_03376 at 443.005 kb on - strand, within H281DRAFT_03377 at 443.126 kb on - strand, within H281DRAFT_03377 at 443.334 kb on + strand, within H281DRAFT_03377 at 443.408 kb on - strand, within H281DRAFT_03377 at 443.409 kb on + strand, within H281DRAFT_03377 at 443.515 kb on - strand, within H281DRAFT_03377 at 443.578 kb on - strand, within H281DRAFT_03377 at 444.388 kb on + strand, within H281DRAFT_03378 at 444.389 kb on - strand, within H281DRAFT_03378 at 444.389 kb on - strand, within H281DRAFT_03378 at 444.391 kb on + strand, within H281DRAFT_03378 at 444.652 kb on + strand, within H281DRAFT_03378
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 441,930 + H281DRAFT_03376 0.25 -0.5 442,002 - H281DRAFT_03376 0.32 -0.2 442,330 - H281DRAFT_03376 0.65 -0.2 442,537 - H281DRAFT_03376 0.85 +0.2 443,005 - H281DRAFT_03377 0.29 -0.4 443,126 - H281DRAFT_03377 0.41 -0.4 443,334 + H281DRAFT_03377 0.60 +1.5 443,408 - H281DRAFT_03377 0.67 +0.6 443,409 + H281DRAFT_03377 0.68 +0.4 443,515 - H281DRAFT_03377 0.78 +1.3 443,578 - H281DRAFT_03377 0.83 -0.4 444,388 + H281DRAFT_03378 0.60 -3.0 444,389 - H281DRAFT_03378 0.60 -0.1 444,389 - H281DRAFT_03378 0.60 +0.7 444,391 + H281DRAFT_03378 0.60 -0.0 444,652 + H281DRAFT_03378 0.88 +1.0
Or see this region's nucleotide sequence