Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02983 and H281DRAFT_02984 are separated by 80 nucleotides H281DRAFT_02984 and H281DRAFT_02985 are separated by 42 nucleotides H281DRAFT_02985 and H281DRAFT_02986 are separated by 259 nucleotides H281DRAFT_02986 and H281DRAFT_02987 are separated by 133 nucleotides
H281DRAFT_02983: H281DRAFT_02983 - hypothetical protein, at 4,856 to 5,320
_02983
H281DRAFT_02984: H281DRAFT_02984 - Uncharacterized protein conserved in bacteria, at 5,401 to 5,799
_02984
H281DRAFT_02985: H281DRAFT_02985 - copper chaperone, at 5,842 to 6,045
_02985
H281DRAFT_02986: H281DRAFT_02986 - Tetratricopeptide (TPR) repeat, at 6,305 to 7,858
_02986
H281DRAFT_02987: H281DRAFT_02987 - hypothetical protein, at 7,992 to 8,951
_02987
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.402 kb on + strand at 5.403 kb on - strand at 5.577 kb on + strand, within H281DRAFT_02984 at 5.749 kb on + strand, within H281DRAFT_02984 at 5.749 kb on + strand, within H281DRAFT_02984 at 5.749 kb on + strand, within H281DRAFT_02984 at 5.749 kb on + strand, within H281DRAFT_02984 at 5.750 kb on - strand, within H281DRAFT_02984 at 5.750 kb on - strand, within H281DRAFT_02984 at 6.018 kb on + strand, within H281DRAFT_02985 at 6.126 kb on + strand at 6.174 kb on - strand at 6.324 kb on + strand at 6.554 kb on - strand, within H281DRAFT_02986 at 6.627 kb on - strand, within H281DRAFT_02986 at 6.653 kb on + strand, within H281DRAFT_02986 at 6.654 kb on - strand, within H281DRAFT_02986 at 6.710 kb on + strand, within H281DRAFT_02986 at 6.711 kb on - strand, within H281DRAFT_02986 at 6.740 kb on + strand, within H281DRAFT_02986 at 6.741 kb on - strand, within H281DRAFT_02986 at 6.741 kb on - strand, within H281DRAFT_02986 at 7.121 kb on + strand, within H281DRAFT_02986 at 7.121 kb on + strand, within H281DRAFT_02986 at 7.122 kb on - strand, within H281DRAFT_02986 at 7.298 kb on + strand, within H281DRAFT_02986 at 7.299 kb on - strand, within H281DRAFT_02986 at 7.542 kb on - strand, within H281DRAFT_02986 at 7.834 kb on - strand at 7.838 kb on + strand at 7.857 kb on - strand at 7.857 kb on - strand at 7.882 kb on + strand at 7.882 kb on + strand at 7.969 kb on + strand at 8.421 kb on + strand, within H281DRAFT_02987 at 8.438 kb on + strand, within H281DRAFT_02987 at 8.643 kb on + strand, within H281DRAFT_02987 at 8.817 kb on + strand, within H281DRAFT_02987 at 8.817 kb on + strand, within H281DRAFT_02987
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,402 + -0.4 5,403 - +0.2 5,577 + H281DRAFT_02984 0.44 +0.4 5,749 + H281DRAFT_02984 0.87 +0.1 5,749 + H281DRAFT_02984 0.87 +1.5 5,749 + H281DRAFT_02984 0.87 +0.2 5,749 + H281DRAFT_02984 0.87 -0.0 5,750 - H281DRAFT_02984 0.87 +0.4 5,750 - H281DRAFT_02984 0.87 -0.8 6,018 + H281DRAFT_02985 0.86 -0.3 6,126 + +0.1 6,174 - -0.5 6,324 + +0.0 6,554 - H281DRAFT_02986 0.16 -2.0 6,627 - H281DRAFT_02986 0.21 -0.8 6,653 + H281DRAFT_02986 0.22 +0.3 6,654 - H281DRAFT_02986 0.22 +0.1 6,710 + H281DRAFT_02986 0.26 -0.3 6,711 - H281DRAFT_02986 0.26 -0.4 6,740 + H281DRAFT_02986 0.28 +0.4 6,741 - H281DRAFT_02986 0.28 +0.2 6,741 - H281DRAFT_02986 0.28 -0.5 7,121 + H281DRAFT_02986 0.53 -0.2 7,121 + H281DRAFT_02986 0.53 +0.2 7,122 - H281DRAFT_02986 0.53 -1.5 7,298 + H281DRAFT_02986 0.64 -0.6 7,299 - H281DRAFT_02986 0.64 +0.2 7,542 - H281DRAFT_02986 0.80 -0.8 7,834 - -0.0 7,838 + +0.6 7,857 - +0.5 7,857 - -0.5 7,882 + +0.4 7,882 + +0.3 7,969 + +0.5 8,421 + H281DRAFT_02987 0.45 +0.1 8,438 + H281DRAFT_02987 0.46 +0.4 8,643 + H281DRAFT_02987 0.68 +0.3 8,817 + H281DRAFT_02987 0.86 -0.3 8,817 + H281DRAFT_02987 0.86 +2.4
Or see this region's nucleotide sequence