Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02967

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02966 and H281DRAFT_02967 are separated by 196 nucleotidesH281DRAFT_02967 and H281DRAFT_02968 overlap by 4 nucleotides H281DRAFT_02966: H281DRAFT_02966 - nucleoside-binding protein, at 580,933 to 581,958 _02966 H281DRAFT_02967: H281DRAFT_02967 - Nicotinamidase-related amidase, at 582,155 to 582,961 _02967 H281DRAFT_02968: H281DRAFT_02968 - amidase, at 582,958 to 584,109 _02968 Position (kb) 582 583Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 581.409 kb on + strand, within H281DRAFT_02966at 581.986 kb on + strandat 581.995 kb on + strandat 583.394 kb on - strand, within H281DRAFT_02968

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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581,409 + H281DRAFT_02966 0.46 +0.2
581,986 + -1.3
581,995 + -4.3
583,394 - H281DRAFT_02968 0.38 +0.8

Or see this region's nucleotide sequence