Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02922 and H281DRAFT_02923 are separated by 116 nucleotides H281DRAFT_02923 and H281DRAFT_02924 are separated by 23 nucleotides
H281DRAFT_02922: H281DRAFT_02922 - transcriptional regulator, AraC family, at 528,069 to 529,139
_02922
H281DRAFT_02923: H281DRAFT_02923 - alkylhydroperoxidase AhpD family core domain-containing protein, at 529,256 to 529,606
_02923
H281DRAFT_02924: H281DRAFT_02924 - Predicted oxidoreductase, at 529,630 to 530,682
_02924
Position (kb) 529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 528.307 kb on + strand, within H281DRAFT_02922 at 528.308 kb on - strand, within H281DRAFT_02922 at 528.308 kb on - strand, within H281DRAFT_02922 at 528.400 kb on - strand, within H281DRAFT_02922 at 529.200 kb on + strand at 529.200 kb on + strand at 529.925 kb on + strand, within H281DRAFT_02924 at 529.926 kb on - strand, within H281DRAFT_02924 at 530.117 kb on + strand, within H281DRAFT_02924 at 530.117 kb on + strand, within H281DRAFT_02924 at 530.118 kb on - strand, within H281DRAFT_02924 at 530.214 kb on - strand, within H281DRAFT_02924 at 530.214 kb on - strand, within H281DRAFT_02924 at 530.301 kb on - strand, within H281DRAFT_02924 at 530.301 kb on - strand, within H281DRAFT_02924
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 528,307 + H281DRAFT_02922 0.22 +0.3 528,308 - H281DRAFT_02922 0.22 -2.0 528,308 - H281DRAFT_02922 0.22 -2.8 528,400 - H281DRAFT_02922 0.31 -2.2 529,200 + +1.1 529,200 + -0.3 529,925 + H281DRAFT_02924 0.28 -0.3 529,926 - H281DRAFT_02924 0.28 -1.6 530,117 + H281DRAFT_02924 0.46 -0.6 530,117 + H281DRAFT_02924 0.46 +0.3 530,118 - H281DRAFT_02924 0.46 +0.4 530,214 - H281DRAFT_02924 0.55 -0.2 530,214 - H281DRAFT_02924 0.55 +0.4 530,301 - H281DRAFT_02924 0.64 -0.6 530,301 - H281DRAFT_02924 0.64 -0.5
Or see this region's nucleotide sequence