Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02272 and H281DRAFT_02273 are separated by 601 nucleotides H281DRAFT_02273 and H281DRAFT_02274 are separated by 173 nucleotides
H281DRAFT_02272: H281DRAFT_02272 - Antitoxin component YwqK of the YwqJK toxin-antitoxin module, at 417,163 to 418,218
_02272
H281DRAFT_02273: H281DRAFT_02273 - hypothetical protein, at 418,820 to 419,194
_02273
H281DRAFT_02274: H281DRAFT_02274 - Site-specific DNA recombinase, at 419,368 to 420,882
_02274
Position (kb) 418
419
420 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 417.893 kb on - strand, within H281DRAFT_02272 at 417.901 kb on + strand, within H281DRAFT_02272 at 417.901 kb on + strand, within H281DRAFT_02272 at 417.961 kb on + strand, within H281DRAFT_02272 at 417.962 kb on - strand, within H281DRAFT_02272 at 417.973 kb on + strand, within H281DRAFT_02272 at 417.974 kb on - strand, within H281DRAFT_02272 at 417.993 kb on - strand, within H281DRAFT_02272 at 418.031 kb on + strand, within H281DRAFT_02272 at 418.031 kb on + strand, within H281DRAFT_02272 at 418.032 kb on - strand, within H281DRAFT_02272 at 418.032 kb on - strand, within H281DRAFT_02272 at 418.061 kb on - strand, within H281DRAFT_02272 at 418.093 kb on + strand, within H281DRAFT_02272 at 418.094 kb on - strand, within H281DRAFT_02272 at 418.213 kb on - strand at 418.277 kb on + strand at 418.475 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.645 kb on + strand at 418.646 kb on - strand at 418.646 kb on - strand at 418.648 kb on + strand at 418.807 kb on - strand at 418.859 kb on - strand, within H281DRAFT_02273 at 418.859 kb on - strand, within H281DRAFT_02273 at 418.985 kb on - strand, within H281DRAFT_02273 at 418.992 kb on - strand, within H281DRAFT_02273 at 418.992 kb on - strand, within H281DRAFT_02273 at 419.036 kb on - strand, within H281DRAFT_02273 at 419.213 kb on + strand at 419.214 kb on - strand at 419.214 kb on - strand at 419.215 kb on + strand at 419.215 kb on + strand at 419.216 kb on - strand at 419.230 kb on + strand at 419.230 kb on + strand at 419.231 kb on - strand at 419.360 kb on - strand at 419.367 kb on + strand at 419.367 kb on + strand at 419.367 kb on + strand at 419.367 kb on + strand at 419.367 kb on + strand at 419.368 kb on - strand at 419.389 kb on + strand at 419.459 kb on + strand at 419.461 kb on + strand at 419.461 kb on + strand at 419.461 kb on + strand at 419.462 kb on - strand at 419.551 kb on + strand, within H281DRAFT_02274 at 419.551 kb on + strand, within H281DRAFT_02274 at 419.552 kb on - strand, within H281DRAFT_02274 at 419.577 kb on - strand, within H281DRAFT_02274 at 419.660 kb on - strand, within H281DRAFT_02274 at 419.660 kb on - strand, within H281DRAFT_02274 at 419.709 kb on - strand, within H281DRAFT_02274 at 419.725 kb on - strand, within H281DRAFT_02274 at 419.789 kb on + strand, within H281DRAFT_02274 at 419.789 kb on + strand, within H281DRAFT_02274 at 419.790 kb on - strand, within H281DRAFT_02274 at 419.790 kb on - strand, within H281DRAFT_02274 at 419.790 kb on - strand at 419.790 kb on - strand, within H281DRAFT_02274 at 419.866 kb on - strand, within H281DRAFT_02274 at 419.954 kb on + strand, within H281DRAFT_02274 at 419.964 kb on - strand, within H281DRAFT_02274 at 419.965 kb on + strand, within H281DRAFT_02274 at 419.965 kb on + strand, within H281DRAFT_02274 at 419.966 kb on - strand, within H281DRAFT_02274 at 419.966 kb on - strand, within H281DRAFT_02274 at 419.966 kb on - strand, within H281DRAFT_02274 at 419.966 kb on - strand, within H281DRAFT_02274 at 420.083 kb on + strand, within H281DRAFT_02274 at 420.084 kb on - strand, within H281DRAFT_02274 at 420.084 kb on - strand, within H281DRAFT_02274 at 420.097 kb on + strand, within H281DRAFT_02274 at 420.097 kb on + strand at 420.097 kb on + strand, within H281DRAFT_02274 at 420.097 kb on + strand, within H281DRAFT_02274 at 420.097 kb on + strand, within H281DRAFT_02274 at 420.097 kb on + strand, within H281DRAFT_02274 at 420.098 kb on - strand, within H281DRAFT_02274 at 420.098 kb on - strand, within H281DRAFT_02274
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 417,893 - H281DRAFT_02272 0.69 +1.0 417,901 + H281DRAFT_02272 0.70 -0.3 417,901 + H281DRAFT_02272 0.70 -0.2 417,961 + H281DRAFT_02272 0.76 -1.7 417,962 - H281DRAFT_02272 0.76 +1.0 417,973 + H281DRAFT_02272 0.77 +0.3 417,974 - H281DRAFT_02272 0.77 +0.6 417,993 - H281DRAFT_02272 0.79 -0.9 418,031 + H281DRAFT_02272 0.82 -0.8 418,031 + H281DRAFT_02272 0.82 -0.4 418,032 - H281DRAFT_02272 0.82 -0.0 418,032 - H281DRAFT_02272 0.82 +0.6 418,061 - H281DRAFT_02272 0.85 +1.0 418,093 + H281DRAFT_02272 0.88 +0.1 418,094 - H281DRAFT_02272 0.88 +0.6 418,213 - +0.1 418,277 + -0.2 418,475 + -0.8 418,572 + -0.2 418,572 + -0.7 418,572 + +0.4 418,572 + -0.1 418,572 + +0.7 418,572 + -0.8 418,572 + -2.3 418,572 + +0.8 418,572 + +3.4 418,572 + -0.8 418,572 + -0.3 418,572 + -0.0 418,572 + +1.5 418,572 + -2.2 418,572 + -1.2 418,572 + -1.2 418,572 + -1.4 418,573 - -0.1 418,573 - +1.1 418,573 - +0.4 418,573 - +0.7 418,573 - +0.1 418,573 - +0.2 418,573 - -0.0 418,645 + -0.2 418,646 - +0.1 418,646 - -0.2 418,648 + +0.7 418,807 - +0.6 418,859 - H281DRAFT_02273 0.10 +0.0 418,859 - H281DRAFT_02273 0.10 -0.3 418,985 - H281DRAFT_02273 0.44 -0.3 418,992 - H281DRAFT_02273 0.46 +1.3 418,992 - H281DRAFT_02273 0.46 -0.6 419,036 - H281DRAFT_02273 0.58 -0.1 419,213 + +0.0 419,214 - +0.3 419,214 - +0.3 419,215 + -0.6 419,215 + +0.7 419,216 - +0.3 419,230 + -0.7 419,230 + +0.2 419,231 - +0.6 419,360 - +1.9 419,367 + -0.5 419,367 + +0.3 419,367 + -0.2 419,367 + +0.2 419,367 + +0.1 419,368 - -1.0 419,389 + +1.3 419,459 + +0.7 419,461 + +1.1 419,461 + -0.2 419,461 + +2.7 419,462 - +1.1 419,551 + H281DRAFT_02274 0.12 +0.8 419,551 + H281DRAFT_02274 0.12 -1.1 419,552 - H281DRAFT_02274 0.12 -0.7 419,577 - H281DRAFT_02274 0.14 +0.9 419,660 - H281DRAFT_02274 0.19 +0.8 419,660 - H281DRAFT_02274 0.19 +0.1 419,709 - H281DRAFT_02274 0.23 -2.7 419,725 - H281DRAFT_02274 0.24 +0.1 419,789 + H281DRAFT_02274 0.28 -0.5 419,789 + H281DRAFT_02274 0.28 +1.4 419,790 - H281DRAFT_02274 0.28 +0.2 419,790 - H281DRAFT_02274 0.28 -0.1 419,790 - +1.1 419,790 - H281DRAFT_02274 0.28 -1.5 419,866 - H281DRAFT_02274 0.33 +0.2 419,954 + H281DRAFT_02274 0.39 -0.9 419,964 - H281DRAFT_02274 0.39 +0.3 419,965 + H281DRAFT_02274 0.39 -1.7 419,965 + H281DRAFT_02274 0.39 -1.7 419,966 - H281DRAFT_02274 0.39 +0.7 419,966 - H281DRAFT_02274 0.39 -0.4 419,966 - H281DRAFT_02274 0.39 +0.4 419,966 - H281DRAFT_02274 0.39 -0.7 420,083 + H281DRAFT_02274 0.47 +0.5 420,084 - H281DRAFT_02274 0.47 -0.8 420,084 - H281DRAFT_02274 0.47 +0.9 420,097 + H281DRAFT_02274 0.48 +1.1 420,097 + +2.7 420,097 + H281DRAFT_02274 0.48 -0.5 420,097 + H281DRAFT_02274 0.48 +0.8 420,097 + H281DRAFT_02274 0.48 -1.8 420,097 + H281DRAFT_02274 0.48 -0.0 420,098 - H281DRAFT_02274 0.48 +0.7 420,098 - H281DRAFT_02274 0.48 -0.7
Or see this region's nucleotide sequence