Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01910 and H281DRAFT_01911 are separated by 67 nucleotides H281DRAFT_01911 and H281DRAFT_01912 are separated by 168 nucleotides H281DRAFT_01912 and H281DRAFT_01913 are separated by 320 nucleotides
H281DRAFT_01910: H281DRAFT_01910 - hypothetical protein, at 23,895 to 24,695
_01910
H281DRAFT_01911: H281DRAFT_01911 - single-strand binding protein, at 24,763 to 25,302
_01911
H281DRAFT_01912: H281DRAFT_01912 - Predicted arabinose efflux permease, MFS family, at 25,471 to 26,736
_01912
H281DRAFT_01913: H281DRAFT_01913 - Excinuclease ABC subunit A, at 27,057 to 29,930
_01913
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.514 kb on + strand, within H281DRAFT_01910 at 24.603 kb on + strand, within H281DRAFT_01910 at 24.603 kb on + strand, within H281DRAFT_01910 at 24.604 kb on - strand, within H281DRAFT_01910 at 24.604 kb on - strand, within H281DRAFT_01910 at 24.604 kb on - strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.608 kb on - strand, within H281DRAFT_01910 at 24.608 kb on - strand, within H281DRAFT_01910 at 24.608 kb on - strand, within H281DRAFT_01910 at 24.608 kb on - strand, within H281DRAFT_01910 at 24.623 kb on + strand at 24.623 kb on + strand at 24.624 kb on - strand at 24.624 kb on - strand at 24.624 kb on - strand at 25.446 kb on - strand at 25.446 kb on - strand at 25.518 kb on + strand at 25.519 kb on - strand at 25.908 kb on - strand, within H281DRAFT_01912 at 26.478 kb on - strand, within H281DRAFT_01912 at 26.931 kb on + strand at 26.931 kb on + strand at 26.932 kb on - strand at 26.932 kb on - strand at 26.932 kb on - strand at 26.932 kb on - strand at 27.006 kb on - strand at 27.008 kb on - strand at 27.008 kb on - strand at 27.008 kb on - strand at 27.008 kb on - strand at 27.008 kb on - strand at 27.008 kb on - strand at 27.010 kb on + strand at 27.050 kb on + strand at 27.051 kb on - strand at 27.072 kb on - strand at 27.118 kb on + strand at 27.118 kb on + strand at 27.118 kb on + strand at 27.119 kb on - strand at 27.139 kb on + strand at 27.140 kb on - strand at 27.140 kb on - strand at 27.213 kb on + strand at 27.214 kb on - strand at 27.234 kb on + strand at 27.234 kb on + strand at 27.235 kb on - strand at 27.385 kb on + strand, within H281DRAFT_01913 at 27.411 kb on + strand, within H281DRAFT_01913 at 27.411 kb on + strand, within H281DRAFT_01913 at 27.411 kb on + strand, within H281DRAFT_01913 at 27.636 kb on + strand, within H281DRAFT_01913 at 27.636 kb on + strand, within H281DRAFT_01913 at 27.636 kb on + strand, within H281DRAFT_01913 at 27.637 kb on - strand, within H281DRAFT_01913 at 27.684 kb on - strand, within H281DRAFT_01913
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 24,514 + H281DRAFT_01910 0.77 +0.2 24,603 + H281DRAFT_01910 0.88 -0.6 24,603 + H281DRAFT_01910 0.88 -2.3 24,604 - H281DRAFT_01910 0.89 +0.6 24,604 - H281DRAFT_01910 0.89 +0.6 24,604 - H281DRAFT_01910 0.89 +0.2 24,607 + H281DRAFT_01910 0.89 +1.2 24,607 + H281DRAFT_01910 0.89 -1.0 24,607 + H281DRAFT_01910 0.89 +1.1 24,607 + H281DRAFT_01910 0.89 -0.9 24,607 + H281DRAFT_01910 0.89 +0.3 24,607 + H281DRAFT_01910 0.89 +0.7 24,608 - H281DRAFT_01910 0.89 -0.4 24,608 - H281DRAFT_01910 0.89 -0.2 24,608 - H281DRAFT_01910 0.89 +0.5 24,608 - H281DRAFT_01910 0.89 -0.5 24,623 + -3.4 24,623 + -0.1 24,624 - -0.0 24,624 - -1.4 24,624 - +0.9 25,446 - +0.3 25,446 - -1.3 25,518 + -0.9 25,519 - +1.8 25,908 - H281DRAFT_01912 0.35 -1.5 26,478 - H281DRAFT_01912 0.80 -0.5 26,931 + -1.9 26,931 + -0.3 26,932 - +0.3 26,932 - -0.8 26,932 - -0.6 26,932 - +1.4 27,006 - +0.2 27,008 - -1.2 27,008 - -2.0 27,008 - -1.0 27,008 - +1.4 27,008 - -0.2 27,008 - +0.2 27,010 + +0.5 27,050 + -0.4 27,051 - -1.7 27,072 - +0.7 27,118 + -0.4 27,118 + -0.7 27,118 + -0.4 27,119 - -1.5 27,139 + +0.1 27,140 - +1.4 27,140 - -1.5 27,213 + +0.2 27,214 - +0.6 27,234 + +1.1 27,234 + -0.1 27,235 - +0.1 27,385 + H281DRAFT_01913 0.11 +0.6 27,411 + H281DRAFT_01913 0.12 +1.6 27,411 + H281DRAFT_01913 0.12 -0.5 27,411 + H281DRAFT_01913 0.12 +0.0 27,636 + H281DRAFT_01913 0.20 +0.5 27,636 + H281DRAFT_01913 0.20 +0.1 27,636 + H281DRAFT_01913 0.20 +0.9 27,637 - H281DRAFT_01913 0.20 -1.8 27,684 - H281DRAFT_01913 0.22 -0.3
Or see this region's nucleotide sequence