Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01284 and H281DRAFT_01285 are separated by 80 nucleotides H281DRAFT_01285 and H281DRAFT_01286 are separated by 60 nucleotides
H281DRAFT_01284: H281DRAFT_01284 - transcriptional regulator, LysR family, at 122,553 to 123,380
_01284
H281DRAFT_01285: H281DRAFT_01285 - ATP adenylyltransferase, at 123,461 to 124,405
_01285
H281DRAFT_01286: H281DRAFT_01286 - mxaL protein, at 124,466 to 125,500
_01286
Position (kb) 123
124
125 Strain fitness (log2 ratio) -2
-1
0
1 at 122.588 kb on + strand at 122.589 kb on - strand at 122.589 kb on - strand at 122.705 kb on - strand, within H281DRAFT_01284 at 122.846 kb on - strand, within H281DRAFT_01284 at 123.156 kb on + strand, within H281DRAFT_01284 at 123.447 kb on - strand at 123.447 kb on - strand at 123.447 kb on - strand at 123.448 kb on + strand at 123.585 kb on + strand, within H281DRAFT_01285 at 123.602 kb on - strand, within H281DRAFT_01285 at 123.960 kb on + strand, within H281DRAFT_01285 at 124.220 kb on + strand, within H281DRAFT_01285 at 124.221 kb on - strand, within H281DRAFT_01285 at 124.221 kb on - strand, within H281DRAFT_01285 at 124.468 kb on - strand at 124.468 kb on - strand at 124.532 kb on - strand at 125.112 kb on + strand, within H281DRAFT_01286 at 125.170 kb on - strand, within H281DRAFT_01286 at 125.373 kb on + strand, within H281DRAFT_01286 at 125.374 kb on - strand, within H281DRAFT_01286 at 125.374 kb on - strand, within H281DRAFT_01286
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 122,588 + -0.4 122,589 - +0.2 122,589 - -0.7 122,705 - H281DRAFT_01284 0.18 +0.3 122,846 - H281DRAFT_01284 0.35 -1.2 123,156 + H281DRAFT_01284 0.73 -1.3 123,447 - -0.0 123,447 - -0.3 123,447 - -0.9 123,448 + -0.4 123,585 + H281DRAFT_01285 0.13 +0.2 123,602 - H281DRAFT_01285 0.15 +0.1 123,960 + H281DRAFT_01285 0.53 -0.2 124,220 + H281DRAFT_01285 0.80 -2.0 124,221 - H281DRAFT_01285 0.80 +0.8 124,221 - H281DRAFT_01285 0.80 -0.5 124,468 - -1.3 124,468 - +0.4 124,532 - -0.9 125,112 + H281DRAFT_01286 0.62 -0.2 125,170 - H281DRAFT_01286 0.68 +0.9 125,373 + H281DRAFT_01286 0.88 -0.3 125,374 - H281DRAFT_01286 0.88 -0.2 125,374 - H281DRAFT_01286 0.88 +1.2
Or see this region's nucleotide sequence