Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01277

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01276 and H281DRAFT_01277 are separated by 77 nucleotidesH281DRAFT_01277 and H281DRAFT_01278 are separated by 120 nucleotides H281DRAFT_01276: H281DRAFT_01276 - vanillin synthase /trans-feruloyl-CoA hydratase, at 112,400 to 113,236 _01276 H281DRAFT_01277: H281DRAFT_01277 - vanillin dehydrogenase, at 113,314 to 114,765 _01277 H281DRAFT_01278: H281DRAFT_01278 - trans-feruloyl-CoA synthase, at 114,886 to 116,775 _01278 Position (kb) 113 114 115Strain fitness (log2 ratio) -1 0 1at 112.410 kb on - strandat 112.623 kb on - strand, within H281DRAFT_01276at 112.907 kb on + strand, within H281DRAFT_01276at 112.908 kb on - strand, within H281DRAFT_01276at 113.109 kb on - strand, within H281DRAFT_01276at 113.220 kb on - strandat 113.221 kb on + strandat 113.221 kb on + strandat 113.246 kb on - strandat 113.324 kb on + strandat 113.329 kb on - strandat 113.742 kb on - strand, within H281DRAFT_01277at 114.602 kb on + strand, within H281DRAFT_01277at 114.603 kb on - strand, within H281DRAFT_01277at 114.603 kb on - strand, within H281DRAFT_01277at 114.764 kb on - strandat 114.883 kb on + strandat 114.884 kb on - strandat 115.279 kb on + strand, within H281DRAFT_01278at 115.339 kb on - strand, within H281DRAFT_01278at 115.614 kb on - strand, within H281DRAFT_01278at 115.756 kb on + strand, within H281DRAFT_01278at 115.757 kb on - strand, within H281DRAFT_01278at 115.757 kb on - strand, within H281DRAFT_01278

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
remove
112,410 - -0.1
112,623 - H281DRAFT_01276 0.27 +0.5
112,907 + H281DRAFT_01276 0.61 +0.5
112,908 - H281DRAFT_01276 0.61 -1.7
113,109 - H281DRAFT_01276 0.85 -0.9
113,220 - -0.2
113,221 + +0.4
113,221 + -0.0
113,246 - -0.3
113,324 + -0.7
113,329 - -1.2
113,742 - H281DRAFT_01277 0.29 +0.2
114,602 + H281DRAFT_01277 0.89 +0.2
114,603 - H281DRAFT_01277 0.89 +0.2
114,603 - H281DRAFT_01277 0.89 -1.5
114,764 - +0.8
114,883 + -0.7
114,884 - +0.5
115,279 + H281DRAFT_01278 0.21 +0.7
115,339 - H281DRAFT_01278 0.24 -0.2
115,614 - H281DRAFT_01278 0.39 -1.2
115,756 + H281DRAFT_01278 0.46 -0.4
115,757 - H281DRAFT_01278 0.46 -0.2
115,757 - H281DRAFT_01278 0.46 -0.6

Or see this region's nucleotide sequence