Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01272

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01271 and H281DRAFT_01272 are separated by 442 nucleotidesH281DRAFT_01272 and H281DRAFT_01273 are separated by 147 nucleotides H281DRAFT_01271: H281DRAFT_01271 - diguanylate cyclase (GGDEF) domain-containing protein, at 104,862 to 106,040 _01271 H281DRAFT_01272: H281DRAFT_01272 - hypothetical protein, at 106,483 to 107,670 _01272 H281DRAFT_01273: H281DRAFT_01273 - feruloyl esterase, at 107,818 to 109,524 _01273 Position (kb) 106 107 108Strain fitness (log2 ratio) -1 0 1 2 3at 105.679 kb on + strand, within H281DRAFT_01271at 106.215 kb on + strandat 106.215 kb on + strandat 106.216 kb on - strandat 106.216 kb on - strandat 106.277 kb on - strandat 106.441 kb on + strandat 106.764 kb on + strand, within H281DRAFT_01272at 106.931 kb on - strand, within H281DRAFT_01272at 107.134 kb on + strand, within H281DRAFT_01272at 107.293 kb on + strand, within H281DRAFT_01272at 107.520 kb on - strand, within H281DRAFT_01272at 107.648 kb on - strandat 107.813 kb on - strandat 108.189 kb on - strand, within H281DRAFT_01273

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
remove
105,679 + H281DRAFT_01271 0.69 +1.6
106,215 + -0.7
106,215 + -0.2
106,216 - -1.1
106,216 - +0.6
106,277 - +0.8
106,441 + -1.2
106,764 + H281DRAFT_01272 0.24 -0.9
106,931 - H281DRAFT_01272 0.38 -0.3
107,134 + H281DRAFT_01272 0.55 -0.2
107,293 + H281DRAFT_01272 0.68 +3.4
107,520 - H281DRAFT_01272 0.87 +0.7
107,648 - -1.1
107,813 - +0.4
108,189 - H281DRAFT_01273 0.22 +0.1

Or see this region's nucleotide sequence