Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01227

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01226 and H281DRAFT_01227 are separated by 15 nucleotidesH281DRAFT_01227 and H281DRAFT_01228 are separated by 39 nucleotides H281DRAFT_01226: H281DRAFT_01226 - transcriptional regulator, LysR family, at 64,065 to 65,060 _01226 H281DRAFT_01227: H281DRAFT_01227 - L-rhamnose 1-dehydrogenase, at 65,076 to 65,858 _01227 H281DRAFT_01228: H281DRAFT_01228 - L-rhamnonate dehydratase, at 65,898 to 67,076 _01228 Position (kb) 65 66Strain fitness (log2 ratio) -1 0 1at 65.372 kb on - strand, within H281DRAFT_01227at 65.480 kb on - strand, within H281DRAFT_01227at 65.623 kb on - strand, within H281DRAFT_01227at 66.107 kb on + strand, within H281DRAFT_01228at 66.108 kb on - strand, within H281DRAFT_01228at 66.109 kb on + strand, within H281DRAFT_01228at 66.110 kb on - strand, within H281DRAFT_01228at 66.110 kb on - strand, within H281DRAFT_01228at 66.440 kb on - strand, within H281DRAFT_01228at 66.602 kb on - strand, within H281DRAFT_01228at 66.637 kb on - strand, within H281DRAFT_01228at 66.708 kb on - strand, within H281DRAFT_01228at 66.749 kb on - strand, within H281DRAFT_01228at 66.751 kb on + strand, within H281DRAFT_01228at 66.752 kb on - strand, within H281DRAFT_01228

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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65,372 - H281DRAFT_01227 0.38 +0.8
65,480 - H281DRAFT_01227 0.52 -1.0
65,623 - H281DRAFT_01227 0.70 -1.1
66,107 + H281DRAFT_01228 0.18 -0.6
66,108 - H281DRAFT_01228 0.18 +0.6
66,109 + H281DRAFT_01228 0.18 -0.6
66,110 - H281DRAFT_01228 0.18 +1.4
66,110 - H281DRAFT_01228 0.18 -0.4
66,440 - H281DRAFT_01228 0.46 +0.1
66,602 - H281DRAFT_01228 0.60 -1.5
66,637 - H281DRAFT_01228 0.63 -0.1
66,708 - H281DRAFT_01228 0.69 -0.0
66,749 - H281DRAFT_01228 0.72 -0.3
66,751 + H281DRAFT_01228 0.72 -0.2
66,752 - H281DRAFT_01228 0.72 +0.0

Or see this region's nucleotide sequence