Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00879 and H281DRAFT_00880 are separated by 118 nucleotides H281DRAFT_00880 and H281DRAFT_00881 are separated by 183 nucleotides H281DRAFT_00881 and H281DRAFT_00882 are separated by 45 nucleotides
H281DRAFT_00879: H281DRAFT_00879 - acetylornithine deacetylase, at 972,859 to 974,109
_00879
H281DRAFT_00880: H281DRAFT_00880 - transcription-repair coupling factor, at 974,228 to 977,710
_00880
H281DRAFT_00881: H281DRAFT_00881 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 977,894 to 978,544
_00881
H281DRAFT_00882: H281DRAFT_00882 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 978,590 to 979,069
_00882
Position (kb) 974
975
976
977
978 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 973.290 kb on + strand, within H281DRAFT_00879 at 973.290 kb on + strand, within H281DRAFT_00879 at 973.291 kb on - strand, within H281DRAFT_00879 at 973.349 kb on + strand, within H281DRAFT_00879 at 973.350 kb on - strand, within H281DRAFT_00879 at 973.350 kb on - strand, within H281DRAFT_00879 at 973.401 kb on + strand, within H281DRAFT_00879 at 973.401 kb on + strand, within H281DRAFT_00879 at 973.402 kb on - strand, within H281DRAFT_00879 at 973.404 kb on - strand, within H281DRAFT_00879 at 973.425 kb on - strand, within H281DRAFT_00879 at 973.816 kb on - strand, within H281DRAFT_00879 at 974.034 kb on + strand at 974.034 kb on + strand at 974.163 kb on + strand at 974.216 kb on + strand at 974.398 kb on + strand at 974.617 kb on - strand, within H281DRAFT_00880 at 974.649 kb on + strand, within H281DRAFT_00880 at 974.772 kb on + strand, within H281DRAFT_00880 at 974.865 kb on + strand, within H281DRAFT_00880 at 974.958 kb on + strand, within H281DRAFT_00880 at 974.958 kb on + strand, within H281DRAFT_00880 at 975.258 kb on + strand, within H281DRAFT_00880 at 975.259 kb on - strand, within H281DRAFT_00880 at 975.259 kb on - strand, within H281DRAFT_00880 at 975.412 kb on + strand, within H281DRAFT_00880 at 975.412 kb on + strand at 975.766 kb on + strand, within H281DRAFT_00880 at 975.767 kb on - strand, within H281DRAFT_00880 at 975.767 kb on - strand, within H281DRAFT_00880 at 975.767 kb on - strand, within H281DRAFT_00880 at 975.927 kb on + strand, within H281DRAFT_00880 at 975.927 kb on + strand, within H281DRAFT_00880 at 976.138 kb on - strand, within H281DRAFT_00880 at 976.216 kb on + strand, within H281DRAFT_00880 at 976.217 kb on - strand at 976.218 kb on + strand, within H281DRAFT_00880 at 976.218 kb on + strand, within H281DRAFT_00880 at 976.219 kb on - strand, within H281DRAFT_00880 at 976.219 kb on - strand, within H281DRAFT_00880 at 976.226 kb on + strand, within H281DRAFT_00880 at 976.227 kb on - strand, within H281DRAFT_00880 at 976.948 kb on - strand, within H281DRAFT_00880 at 976.948 kb on - strand, within H281DRAFT_00880 at 977.338 kb on - strand, within H281DRAFT_00880 at 977.683 kb on - strand at 977.710 kb on + strand at 977.710 kb on + strand at 977.711 kb on - strand at 977.711 kb on - strand at 977.785 kb on + strand at 977.785 kb on + strand at 977.786 kb on - strand at 977.788 kb on + strand at 977.790 kb on + strand at 977.804 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 973,290 + H281DRAFT_00879 0.34 -0.1 973,290 + H281DRAFT_00879 0.34 -0.8 973,291 - H281DRAFT_00879 0.35 +0.3 973,349 + H281DRAFT_00879 0.39 +0.8 973,350 - H281DRAFT_00879 0.39 -3.2 973,350 - H281DRAFT_00879 0.39 +1.4 973,401 + H281DRAFT_00879 0.43 -1.0 973,401 + H281DRAFT_00879 0.43 +0.3 973,402 - H281DRAFT_00879 0.43 +0.6 973,404 - H281DRAFT_00879 0.44 -2.5 973,425 - H281DRAFT_00879 0.45 +0.1 973,816 - H281DRAFT_00879 0.76 -0.6 974,034 + -1.2 974,034 + +0.7 974,163 + +0.8 974,216 + -0.3 974,398 + -0.4 974,617 - H281DRAFT_00880 0.11 +0.5 974,649 + H281DRAFT_00880 0.12 +0.1 974,772 + H281DRAFT_00880 0.16 -0.2 974,865 + H281DRAFT_00880 0.18 -0.7 974,958 + H281DRAFT_00880 0.21 +1.1 974,958 + H281DRAFT_00880 0.21 +0.3 975,258 + H281DRAFT_00880 0.30 -1.9 975,259 - H281DRAFT_00880 0.30 -0.4 975,259 - H281DRAFT_00880 0.30 -1.5 975,412 + H281DRAFT_00880 0.34 +0.4 975,412 + -1.3 975,766 + H281DRAFT_00880 0.44 +0.2 975,767 - H281DRAFT_00880 0.44 -0.4 975,767 - H281DRAFT_00880 0.44 +0.5 975,767 - H281DRAFT_00880 0.44 -4.0 975,927 + H281DRAFT_00880 0.49 +0.1 975,927 + H281DRAFT_00880 0.49 +0.5 976,138 - H281DRAFT_00880 0.55 +0.5 976,216 + H281DRAFT_00880 0.57 +0.9 976,217 - -0.6 976,218 + H281DRAFT_00880 0.57 -0.4 976,218 + H281DRAFT_00880 0.57 -0.1 976,219 - H281DRAFT_00880 0.57 +1.1 976,219 - H281DRAFT_00880 0.57 -0.6 976,226 + H281DRAFT_00880 0.57 -0.3 976,227 - H281DRAFT_00880 0.57 -0.2 976,948 - H281DRAFT_00880 0.78 +0.1 976,948 - H281DRAFT_00880 0.78 +0.9 977,338 - H281DRAFT_00880 0.89 -1.3 977,683 - -3.7 977,710 + -0.3 977,710 + +0.7 977,711 - +0.7 977,711 - +1.8 977,785 + -0.2 977,785 + -0.5 977,786 - -0.4 977,788 + +0.7 977,790 + +0.0 977,804 + +0.4
Or see this region's nucleotide sequence