Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00536 and H281DRAFT_00537 overlap by 14 nucleotides H281DRAFT_00537 and H281DRAFT_00538 are separated by 236 nucleotides
H281DRAFT_00536: H281DRAFT_00536 - hypothetical protein, at 602,415 to 603,830
_00536
H281DRAFT_00537: H281DRAFT_00537 - DNA mismatch repair protein MutS, at 603,817 to 606,501
_00537
H281DRAFT_00538: H281DRAFT_00538 - Major Facilitator Superfamily protein, at 606,738 to 608,099
_00538
Position (kb) 603
604
605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 602.890 kb on - strand, within H281DRAFT_00536 at 602.963 kb on - strand, within H281DRAFT_00536 at 603.505 kb on + strand, within H281DRAFT_00536 at 603.506 kb on - strand, within H281DRAFT_00536 at 603.506 kb on - strand, within H281DRAFT_00536 at 603.662 kb on - strand, within H281DRAFT_00536 at 603.703 kb on - strand at 603.703 kb on - strand at 603.860 kb on + strand at 603.861 kb on - strand at 603.861 kb on - strand at 603.861 kb on - strand at 604.263 kb on - strand, within H281DRAFT_00537 at 604.263 kb on - strand, within H281DRAFT_00537 at 604.281 kb on + strand, within H281DRAFT_00537 at 604.532 kb on + strand, within H281DRAFT_00537 at 604.532 kb on + strand, within H281DRAFT_00537 at 604.533 kb on - strand, within H281DRAFT_00537 at 604.533 kb on - strand, within H281DRAFT_00537 at 604.590 kb on + strand, within H281DRAFT_00537 at 604.638 kb on + strand, within H281DRAFT_00537 at 604.639 kb on - strand, within H281DRAFT_00537 at 604.960 kb on + strand, within H281DRAFT_00537 at 605.025 kb on - strand, within H281DRAFT_00537 at 605.025 kb on - strand, within H281DRAFT_00537 at 605.046 kb on - strand, within H281DRAFT_00537 at 605.046 kb on - strand, within H281DRAFT_00537 at 605.418 kb on + strand, within H281DRAFT_00537 at 605.419 kb on - strand, within H281DRAFT_00537 at 605.629 kb on - strand, within H281DRAFT_00537 at 605.667 kb on + strand, within H281DRAFT_00537 at 605.668 kb on - strand, within H281DRAFT_00537 at 605.670 kb on - strand, within H281DRAFT_00537 at 605.738 kb on + strand, within H281DRAFT_00537 at 605.739 kb on - strand, within H281DRAFT_00537 at 606.160 kb on + strand, within H281DRAFT_00537 at 606.160 kb on + strand, within H281DRAFT_00537 at 606.183 kb on + strand, within H281DRAFT_00537 at 606.183 kb on + strand, within H281DRAFT_00537 at 606.238 kb on + strand at 606.255 kb on - strand at 606.380 kb on + strand at 606.381 kb on - strand at 606.381 kb on - strand at 606.399 kb on - strand at 606.521 kb on + strand at 606.643 kb on + strand at 606.644 kb on - strand at 607.056 kb on - strand, within H281DRAFT_00538 at 607.056 kb on - strand, within H281DRAFT_00538 at 607.057 kb on + strand, within H281DRAFT_00538 at 607.058 kb on - strand, within H281DRAFT_00538 at 607.073 kb on - strand, within H281DRAFT_00538 at 607.073 kb on - strand, within H281DRAFT_00538 at 607.121 kb on - strand, within H281DRAFT_00538 at 607.356 kb on + strand, within H281DRAFT_00538 at 607.405 kb on + strand, within H281DRAFT_00538 at 607.405 kb on + strand, within H281DRAFT_00538 at 607.405 kb on + strand, within H281DRAFT_00538 at 607.405 kb on + strand, within H281DRAFT_00538 at 607.406 kb on - strand at 607.406 kb on - strand, within H281DRAFT_00538 at 607.406 kb on - strand, within H281DRAFT_00538
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 602,890 - H281DRAFT_00536 0.34 -0.6 602,963 - H281DRAFT_00536 0.39 +3.0 603,505 + H281DRAFT_00536 0.77 -0.5 603,506 - H281DRAFT_00536 0.77 +0.3 603,506 - H281DRAFT_00536 0.77 +1.1 603,662 - H281DRAFT_00536 0.88 -0.2 603,703 - +1.1 603,703 - -1.6 603,860 + +0.3 603,861 - -0.5 603,861 - +0.5 603,861 - +0.7 604,263 - H281DRAFT_00537 0.17 -0.5 604,263 - H281DRAFT_00537 0.17 +1.4 604,281 + H281DRAFT_00537 0.17 -0.2 604,532 + H281DRAFT_00537 0.27 +0.1 604,532 + H281DRAFT_00537 0.27 +1.0 604,533 - H281DRAFT_00537 0.27 +0.6 604,533 - H281DRAFT_00537 0.27 -2.5 604,590 + H281DRAFT_00537 0.29 -0.3 604,638 + H281DRAFT_00537 0.31 -0.4 604,639 - H281DRAFT_00537 0.31 -0.1 604,960 + H281DRAFT_00537 0.43 +0.3 605,025 - H281DRAFT_00537 0.45 +0.5 605,025 - H281DRAFT_00537 0.45 -0.9 605,046 - H281DRAFT_00537 0.46 +0.3 605,046 - H281DRAFT_00537 0.46 -0.4 605,418 + H281DRAFT_00537 0.60 +0.9 605,419 - H281DRAFT_00537 0.60 +0.5 605,629 - H281DRAFT_00537 0.67 +1.6 605,667 + H281DRAFT_00537 0.69 +0.1 605,668 - H281DRAFT_00537 0.69 -1.6 605,670 - H281DRAFT_00537 0.69 -0.2 605,738 + H281DRAFT_00537 0.72 +1.7 605,739 - H281DRAFT_00537 0.72 -0.7 606,160 + H281DRAFT_00537 0.87 +0.2 606,160 + H281DRAFT_00537 0.87 -1.4 606,183 + H281DRAFT_00537 0.88 -0.9 606,183 + H281DRAFT_00537 0.88 +0.4 606,238 + +0.4 606,255 - +0.5 606,380 + -0.6 606,381 - +0.6 606,381 - +0.3 606,399 - -0.3 606,521 + -0.3 606,643 + +0.0 606,644 - +0.5 607,056 - H281DRAFT_00538 0.23 +0.8 607,056 - H281DRAFT_00538 0.23 -0.0 607,057 + H281DRAFT_00538 0.23 -0.3 607,058 - H281DRAFT_00538 0.23 +0.7 607,073 - H281DRAFT_00538 0.25 +0.3 607,073 - H281DRAFT_00538 0.25 +0.8 607,121 - H281DRAFT_00538 0.28 +0.3 607,356 + H281DRAFT_00538 0.45 +1.2 607,405 + H281DRAFT_00538 0.49 +1.2 607,405 + H281DRAFT_00538 0.49 -0.0 607,405 + H281DRAFT_00538 0.49 -0.6 607,405 + H281DRAFT_00538 0.49 +1.4 607,406 - -1.5 607,406 - H281DRAFT_00538 0.49 -0.3 607,406 - H281DRAFT_00538 0.49 +0.9
Or see this region's nucleotide sequence