Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00070 and H281DRAFT_00071 are separated by 794 nucleotides H281DRAFT_00071 and H281DRAFT_00072 are separated by 861 nucleotides
H281DRAFT_00070: H281DRAFT_00070 - hypothetical protein, at 70,244 to 71,071
_00070
H281DRAFT_00071: H281DRAFT_00071 - Integrase, at 71,866 to 72,945
_00071
H281DRAFT_00072: H281DRAFT_00072 - hypothetical protein, at 73,807 to 74,418
_00072
Position (kb)
71
72
73 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 70.894 kb on - strand, within H281DRAFT_00070 at 71.163 kb on + strand at 71.252 kb on - strand at 71.332 kb on + strand at 71.332 kb on + strand at 71.342 kb on - strand at 72.086 kb on - strand, within H281DRAFT_00071 at 72.194 kb on + strand, within H281DRAFT_00071 at 72.767 kb on + strand at 72.768 kb on - strand, within H281DRAFT_00071 at 72.768 kb on - strand, within H281DRAFT_00071 at 72.768 kb on - strand, within H281DRAFT_00071 at 72.768 kb on - strand, within H281DRAFT_00071 at 72.833 kb on + strand, within H281DRAFT_00071 at 72.939 kb on + strand at 72.939 kb on + strand at 72.946 kb on - strand at 72.980 kb on + strand at 72.981 kb on - strand at 72.981 kb on - strand at 72.981 kb on - strand at 73.122 kb on + strand at 73.122 kb on + strand at 73.182 kb on - strand at 73.251 kb on - strand at 73.251 kb on - strand at 73.272 kb on + strand at 73.273 kb on - strand at 73.339 kb on + strand at 73.339 kb on + strand at 73.456 kb on + strand at 73.456 kb on + strand at 73.457 kb on - strand at 73.472 kb on + strand at 73.473 kb on - strand at 73.488 kb on - strand at 73.488 kb on - strand at 73.570 kb on + strand at 73.570 kb on + strand at 73.570 kb on + strand at 73.571 kb on - strand at 73.641 kb on + strand at 73.644 kb on - strand at 73.666 kb on + strand at 73.720 kb on - strand at 73.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 70,894 - H281DRAFT_00070 0.79 -2.1 71,163 + +1.6 71,252 - +0.2 71,332 + -0.6 71,332 + +0.3 71,342 - +1.5 72,086 - H281DRAFT_00071 0.20 -0.3 72,194 + H281DRAFT_00071 0.30 -0.2 72,767 + -0.1 72,768 - H281DRAFT_00071 0.84 +1.2 72,768 - H281DRAFT_00071 0.84 -0.1 72,768 - H281DRAFT_00071 0.84 -0.8 72,768 - H281DRAFT_00071 0.84 -0.0 72,833 + H281DRAFT_00071 0.90 +0.1 72,939 + +0.1 72,939 + -1.3 72,946 - +1.1 72,980 + -0.5 72,981 - -0.1 72,981 - +0.6 72,981 - +3.2 73,122 + -0.3 73,122 + +1.2 73,182 - +1.5 73,251 - -0.4 73,251 - +1.8 73,272 + -0.2 73,273 - -1.7 73,339 + +2.1 73,339 + -0.3 73,456 + -1.1 73,456 + -0.1 73,457 - +0.4 73,472 + +0.5 73,473 - +0.2 73,488 - -0.9 73,488 - -0.1 73,570 + -0.0 73,570 + +1.2 73,570 + -1.5 73,571 - +0.3 73,641 + +0.3 73,644 - -1.1 73,666 + -0.0 73,720 - +0.6 73,851 - +1.7
Or see this region's nucleotide sequence