Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0061

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0058 and Ga0059261_0059 are separated by 15 nucleotidesGa0059261_0059 and Ga0059261_0060 are separated by 2 nucleotidesGa0059261_0060 and Ga0059261_0061 are separated by 147 nucleotidesGa0059261_0061 and Ga0059261_0062 are separated by 33 nucleotidesGa0059261_0062 and Ga0059261_0063 overlap by 4 nucleotides Ga0059261_0058: Ga0059261_0058 - monothiol glutaredoxin, Grx4 family, at 52,462 to 52,791 _0058 Ga0059261_0059: Ga0059261_0059 - Stress-induced morphogen (activity unknown), at 52,807 to 53,049 _0059 Ga0059261_0060: Ga0059261_0060 - Uncharacterized conserved protein, at 53,052 to 53,375 _0060 Ga0059261_0061: Ga0059261_0061 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19), at 53,523 to 54,368 _0061 Ga0059261_0062: Ga0059261_0062 - hypothetical protein, at 54,402 to 54,854 _0062 Ga0059261_0063: Ga0059261_0063 - Ribonuclease I, at 54,851 to 55,549 _0063 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 52.887 kb on - strand, within Ga0059261_0059at 52.887 kb on - strand, within Ga0059261_0059at 52.887 kb on - strand, within Ga0059261_0059at 52.953 kb on - strand, within Ga0059261_0059at 53.053 kb on + strandat 53.054 kb on - strandat 53.054 kb on - strandat 53.225 kb on - strand, within Ga0059261_0060at 53.225 kb on - strand, within Ga0059261_0060at 53.225 kb on - strand, within Ga0059261_0060at 53.225 kb on - strand, within Ga0059261_0060at 53.225 kb on - strand, within Ga0059261_0060at 53.410 kb on + strandat 53.410 kb on + strandat 53.411 kb on - strandat 53.411 kb on - strandat 53.411 kb on - strandat 53.411 kb on - strandat 53.411 kb on - strandat 53.489 kb on + strandat 53.491 kb on + strandat 53.491 kb on + strandat 53.491 kb on + strandat 54.373 kb on + strandat 54.373 kb on + strandat 54.373 kb on + strandat 54.374 kb on - strandat 54.438 kb on + strandat 54.438 kb on + strandat 54.439 kb on - strandat 54.439 kb on - strandat 54.439 kb on - strandat 54.439 kb on - strandat 54.439 kb on - strandat 54.439 kb on - strandat 54.456 kb on - strand, within Ga0059261_0062at 54.612 kb on + strand, within Ga0059261_0062at 54.612 kb on + strand, within Ga0059261_0062at 54.612 kb on + strand, within Ga0059261_0062at 54.613 kb on - strand, within Ga0059261_0062at 54.708 kb on + strand, within Ga0059261_0062at 54.708 kb on + strand, within Ga0059261_0062at 54.709 kb on - strand, within Ga0059261_0062at 54.709 kb on - strand, within Ga0059261_0062at 54.709 kb on - strand, within Ga0059261_0062at 55.003 kb on + strand, within Ga0059261_0063at 55.003 kb on + strand, within Ga0059261_0063at 55.003 kb on + strand, within Ga0059261_0063at 55.003 kb on + strandat 55.003 kb on + strand, within Ga0059261_0063at 55.004 kb on - strand, within Ga0059261_0063at 55.004 kb on - strand, within Ga0059261_0063at 55.004 kb on - strand, within Ga0059261_0063at 55.142 kb on + strand, within Ga0059261_0063at 55.143 kb on - strand, within Ga0059261_0063at 55.143 kb on - strandat 55.143 kb on - strandat 55.143 kb on - strand, within Ga0059261_0063at 55.229 kb on + strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strandat 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.271 kb on + strand, within Ga0059261_0063at 55.272 kb on - strand, within Ga0059261_0063at 55.272 kb on - strand, within Ga0059261_0063at 55.295 kb on + strand, within Ga0059261_0063at 55.295 kb on + strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.311 kb on - strand, within Ga0059261_0063

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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52,887 - Ga0059261_0059 0.33 +1.4
52,887 - Ga0059261_0059 0.33 +0.0
52,887 - Ga0059261_0059 0.33 +1.1
52,953 - Ga0059261_0059 0.60 +1.9
53,053 + -1.4
53,054 - +0.3
53,054 - +1.5
53,225 - Ga0059261_0060 0.53 +1.1
53,225 - Ga0059261_0060 0.53 +0.6
53,225 - Ga0059261_0060 0.53 +0.8
53,225 - Ga0059261_0060 0.53 +0.7
53,225 - Ga0059261_0060 0.53 +0.7
53,410 + +0.2
53,410 + -0.4
53,411 - +0.6
53,411 - +0.2
53,411 - +0.1
53,411 - +0.6
53,411 - +0.5
53,489 + +0.5
53,491 + +1.5
53,491 + +0.6
53,491 + +1.1
54,373 + -1.5
54,373 + -1.8
54,373 + -0.3
54,374 - +0.3
54,438 + -0.3
54,438 + +0.2
54,439 - -0.1
54,439 - +0.3
54,439 - +0.3
54,439 - -0.2
54,439 - +0.9
54,439 - -0.0
54,456 - Ga0059261_0062 0.12 +1.0
54,612 + Ga0059261_0062 0.46 +0.2
54,612 + Ga0059261_0062 0.46 -0.2
54,612 + Ga0059261_0062 0.46 +0.8
54,613 - Ga0059261_0062 0.47 -1.0
54,708 + Ga0059261_0062 0.68 -0.7
54,708 + Ga0059261_0062 0.68 -0.6
54,709 - Ga0059261_0062 0.68 -0.2
54,709 - Ga0059261_0062 0.68 -0.1
54,709 - Ga0059261_0062 0.68 +0.2
55,003 + Ga0059261_0063 0.22 +0.2
55,003 + Ga0059261_0063 0.22 -0.3
55,003 + Ga0059261_0063 0.22 -0.4
55,003 + +1.1
55,003 + Ga0059261_0063 0.22 -0.2
55,004 - Ga0059261_0063 0.22 -0.5
55,004 - Ga0059261_0063 0.22 +0.8
55,004 - Ga0059261_0063 0.22 +0.0
55,142 + Ga0059261_0063 0.42 +0.5
55,143 - Ga0059261_0063 0.42 +0.6
55,143 - +0.3
55,143 - -1.3
55,143 - Ga0059261_0063 0.42 +0.0
55,229 + Ga0059261_0063 0.54 -0.1
55,230 - Ga0059261_0063 0.54 +0.1
55,230 - +1.3
55,230 - Ga0059261_0063 0.54 -0.8
55,230 - Ga0059261_0063 0.54 -0.6
55,230 - Ga0059261_0063 0.54 +0.4
55,230 - Ga0059261_0063 0.54 +0.0
55,230 - Ga0059261_0063 0.54 +0.9
55,271 + Ga0059261_0063 0.60 -1.0
55,272 - Ga0059261_0063 0.60 -0.6
55,272 - Ga0059261_0063 0.60 -0.2
55,295 + Ga0059261_0063 0.64 +0.3
55,295 + Ga0059261_0063 0.64 -0.0
55,296 - Ga0059261_0063 0.64 -0.5
55,296 - Ga0059261_0063 0.64 -2.2
55,296 - Ga0059261_0063 0.64 -0.8
55,296 - Ga0059261_0063 0.64 -0.5
55,311 - Ga0059261_0063 0.66 -1.5

Or see this region's nucleotide sequence