Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01145

Experiment: PYE with sodium fluoride 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with sodium fluoride 15 mM
1,247,780	+				+0.6
1,247,785	+				-0.2
1,247,793	-				+0.2
1,247,793	-				+0.8
1,247,850	-		CCNA_01143	0.19	+0.3
1,247,850	-		CCNA_01143	0.19	+0.1
1,247,853	-		CCNA_01143	0.20	+0.2
1,247,985	+		CCNA_01143	0.47	-0.1
1,247,993	-		CCNA_01143	0.49	+0.3
1,247,993	-		CCNA_01143	0.49	-0.2
1,247,995	+		CCNA_01143	0.49	-1.4
1,247,995	+		CCNA_01143	0.49	+0.1
1,248,028	+		CCNA_01143	0.56	-0.2
1,248,029	-		CCNA_01143	0.56	-1.0
1,248,036	-		CCNA_01143	0.58	-0.0
1,248,087	-		CCNA_01143	0.68	-0.5
1,248,091	-		CCNA_01143	0.69	-0.6
1,248,107	+		CCNA_01143	0.72	+0.3
1,248,138	+		CCNA_01143	0.79	-0.5
1,248,142	-		CCNA_01143	0.80	-0.7
1,248,179	+		CCNA_01143	0.87	-0.6
1,248,195	+				-0.5
1,248,247	+				-0.2
1,248,255	-				+0.7
1,248,255	-				+0.9
1,248,261	-				-0.2
1,248,275	-				-0.3
1,248,275	-				-0.2
1,248,292	+				-1.8
1,248,292	+				+0.7
1,248,292	+				+0.3
1,248,300	-				+0.2
1,248,300	-				-0.6
1,248,376	+		CCNA_01144	0.27	+0.4
1,248,385	-		CCNA_01144	0.30	+0.2
1,248,391	-		CCNA_01144	0.31	+0.4
1,248,432	+		CCNA_01144	0.41	-0.3
1,248,462	-		CCNA_01144	0.49	-0.5
1,248,464	+		CCNA_01144	0.50	+0.7
1,248,464	+		CCNA_01144	0.50	+1.1
1,248,467	-		CCNA_01144	0.50	+0.3
1,248,483	+		CCNA_01144	0.54	-0.7
1,248,491	-		CCNA_01144	0.56	-0.6
1,248,491	-		CCNA_01144	0.56	-1.2
1,248,496	-		CCNA_01144	0.58	+0.0
1,248,496	-		CCNA_01144	0.58	-0.2
1,248,496	-		CCNA_01144	0.58	-0.9
1,248,496	-		CCNA_01144	0.58	+0.9
1,248,511	-		CCNA_01144	0.62	-0.1
1,248,530	-		CCNA_01144	0.66	+0.1
1,248,544	+		CCNA_01144	0.70	-1.5
1,248,563	-		CCNA_01144	0.75	+1.1
1,248,580	-		CCNA_01144	0.79	-0.3
1,248,580	-		CCNA_01144	0.79	-0.5
1,248,616	+		CCNA_01144	0.88	-2.1
1,248,624	-				-0.1
1,248,774	-				-1.2
1,248,813	-				-1.2
1,248,815	+				+0.7
1,248,815	+				-1.3
1,248,815	+				-0.9
1,248,815	+				+1.3
1,248,815	+				-0.9
1,248,815	+				+0.2
1,248,815	+				-0.3
1,248,815	+				-2.0
1,248,820	+				+0.9
1,248,823	-				+0.8
1,248,823	-				-1.2
1,248,823	-				-0.2
1,248,823	-				+0.3
1,248,823	-				-1.3
1,248,823	-				+0.8
1,248,826	+				-0.5
1,248,827	-				+0.9
1,248,828	-				+0.3
1,248,828	-				+0.8
1,248,848	-		CCNA_01145	0.10	-1.3
1,248,854	+		CCNA_01145	0.11	+0.2
1,248,865	+		CCNA_01145	0.11	-0.3
1,248,884	+		CCNA_01145	0.12	-1.1
1,248,892	-		CCNA_01145	0.13	-1.5
1,249,001	-		CCNA_01145	0.20	-0.7
1,249,041	+		CCNA_01145	0.22	-0.7
1,249,041	+		CCNA_01145	0.22	-0.2
1,249,041	+		CCNA_01145	0.22	+0.7
1,249,049	-		CCNA_01145	0.23	+0.7
1,249,049	-		CCNA_01145	0.23	-0.8
1,249,049	-		CCNA_01145	0.23	+0.0
1,249,049	-		CCNA_01145	0.23	-1.3
1,249,049	-		CCNA_01145	0.23	-0.9
1,249,049	-		CCNA_01145	0.23	+0.1
1,249,049	-		CCNA_01145	0.23	+0.2
1,249,056	+		CCNA_01145	0.23	+0.2
1,249,079	+		CCNA_01145	0.25	-1.3
1,249,082	-		CCNA_01145	0.25	-0.3
1,249,087	-		CCNA_01145	0.25	+1.1
1,249,087	-		CCNA_01145	0.25	-0.8
1,249,087	-		CCNA_01145	0.25	+1.3
1,249,089	+		CCNA_01145	0.25	-1.3
1,249,099	+		CCNA_01145	0.26	-1.5
1,249,099	+		CCNA_01145	0.26	+0.6
1,249,099	+		CCNA_01145	0.26	-2.7
1,249,104	+		CCNA_01145	0.26	-1.7
1,249,107	-		CCNA_01145	0.26	-2.8
1,249,107	-		CCNA_01145	0.26	-0.2
1,249,107	-		CCNA_01145	0.26	+0.2
1,249,107	-		CCNA_01145	0.26	-0.5
1,249,107	-		CCNA_01145	0.26	-0.7
1,249,114	+		CCNA_01145	0.27	-0.5
1,249,122	-		CCNA_01145	0.27	-1.7
1,249,122	-		CCNA_01145	0.27	-1.5
1,249,125	+		CCNA_01145	0.27	-0.3
1,249,127	-		CCNA_01145	0.28	-3.4
1,249,135	+		CCNA_01145	0.28	-2.0
1,249,135	+		CCNA_01145	0.28	-0.2
1,249,193	-		CCNA_01145	0.32	-0.5
1,249,212	-		CCNA_01145	0.33	-1.8
1,249,212	-		CCNA_01145	0.33	+1.1
1,249,213	-		CCNA_01145	0.33	-1.4
1,249,214	+		CCNA_01145	0.33	-0.3
1,249,222	-		CCNA_01145	0.34	+0.6
1,249,222	-		CCNA_01145	0.34	+0.6
1,249,222	-		CCNA_01145	0.34	+0.7
1,249,222	-		CCNA_01145	0.34	+0.7
1,249,222	-		CCNA_01145	0.34	+1.5
1,249,222	-		CCNA_01145	0.34	+1.4
1,249,222	-		CCNA_01145	0.34	+1.4
1,249,222	-		CCNA_01145	0.34	+0.8
1,249,222	-		CCNA_01145	0.34	+0.5
1,249,224	+		CCNA_01145	0.34	-0.7
1,249,224	+		CCNA_01145	0.34	+0.1
1,249,232	-		CCNA_01145	0.34	-1.4
1,249,232	-		CCNA_01145	0.34	-2.1
1,249,251	+		CCNA_01145	0.35	-0.2
1,249,253	+		CCNA_01145	0.35	-1.3
1,249,259	-		CCNA_01145	0.36	-1.2
1,249,259	-		CCNA_01145	0.36	-1.3
1,249,264	-		CCNA_01145	0.36	-2.8
1,249,279	+		CCNA_01145	0.37	+0.3
1,249,325	+		CCNA_01145	0.40	+0.1
1,249,358	-		CCNA_01145	0.42	-1.9
1,249,415	+		CCNA_01145	0.46	-0.2
1,249,444	+		CCNA_01145	0.47	-0.9
1,249,454	+		CCNA_01145	0.48	-1.3
1,249,596	-		CCNA_01145	0.57	-1.2
1,249,612	+		CCNA_01145	0.58	-2.5
1,249,612	+		CCNA_01145	0.58	-1.7
1,249,612	+		CCNA_01145	0.58	+1.4
1,249,620	-		CCNA_01145	0.58	-2.2
1,249,620	-		CCNA_01145	0.58	-1.7
1,249,653	-		CCNA_01145	0.60	-3.0
1,249,663	-		CCNA_01145	0.61	-1.6
1,249,671	+		CCNA_01145	0.61	-1.5
1,249,671	+		CCNA_01145	0.61	-0.6
1,249,671	+		CCNA_01145	0.61	-1.3
1,249,671	+		CCNA_01145	0.61	-0.5
1,249,679	-		CCNA_01145	0.62	-2.5
1,249,679	-		CCNA_01145	0.62	-0.5
1,249,679	-		CCNA_01145	0.62	-1.0
1,249,679	-		CCNA_01145	0.62	-0.2
1,249,726	+		CCNA_01145	0.65	+0.1
1,249,726	+		CCNA_01145	0.65	-0.5
1,249,726	-		CCNA_01145	0.65	-1.3
1,249,757	-		CCNA_01145	0.67	-0.9
1,249,768	+		CCNA_01145	0.68	-0.1
1,249,768	+		CCNA_01145	0.68	-1.2
1,249,768	+		CCNA_01145	0.68	+0.7
1,249,769	-		CCNA_01145	0.68	-1.2
1,249,786	+		CCNA_01145	0.69	-1.3
1,249,786	+		CCNA_01145	0.69	-0.3
1,249,786	+		CCNA_01145	0.69	-1.0
1,249,794	-		CCNA_01145	0.69	+0.0
1,249,794	-		CCNA_01145	0.69	-1.3
1,249,794	-		CCNA_01145	0.69	-3.3
1,249,819	+		CCNA_01145	0.71	-0.0
1,249,847	-		CCNA_01145	0.72	+0.8
1,249,864	+		CCNA_01145	0.74	-0.7
1,249,864	+		CCNA_01145	0.74	-0.3
1,249,869	+		CCNA_01145	0.74	-0.5
1,249,869	+		CCNA_01145	0.74	-1.2
1,249,869	+		CCNA_01145	0.74	-0.3
1,249,869	+		CCNA_01145	0.74	-1.6
1,249,869	+		CCNA_01145	0.74	-0.7
1,249,869	+		CCNA_01145	0.74	-1.7
1,249,869	+		CCNA_01145	0.74	+2.2
1,249,872	-		CCNA_01145	0.74	-1.3
1,249,872	-		CCNA_01145	0.74	-2.0
1,249,874	+		CCNA_01145	0.74	-1.0
1,249,877	-		CCNA_01145	0.74	-1.7
1,249,877	-		CCNA_01145	0.74	-2.2
1,249,877	-		CCNA_01145	0.74	-1.0
1,249,877	-		CCNA_01145	0.74	-0.9
1,249,884	-		CCNA_01145	0.75	-3.4
1,249,913	+		CCNA_01145	0.77	-0.7
1,249,921	-		CCNA_01145	0.77	-0.7
1,249,945	+		CCNA_01145	0.79	+0.1
1,249,954	-		CCNA_01145	0.79	-1.7
1,249,954	-		CCNA_01145	0.79	-1.5
1,249,959	-		CCNA_01145	0.79	-0.0
1,249,973	+		CCNA_01145	0.80	-2.3
1,249,974	+		CCNA_01145	0.80	-0.8
1,249,993	+		CCNA_01145	0.82	+0.5
1,249,997	+		CCNA_01145	0.82	-0.3
1,250,001	-		CCNA_01145	0.82	-1.4
1,250,001	-		CCNA_01145	0.82	-2.0
1,250,024	+		CCNA_01145	0.83	-1.0
1,250,026	+		CCNA_01145	0.84	-0.3
1,250,026	+		CCNA_01145	0.84	-1.0
1,250,050	+		CCNA_01145	0.85	+0.7
1,250,050	+		CCNA_01145	0.85	-0.2
1,250,082	+		CCNA_01145	0.87	-1.2
1,250,082	+		CCNA_01145	0.87	-0.0
1,250,082	+		CCNA_01145	0.87	-0.8
1,250,090	-		CCNA_01145	0.88	+1.7
1,250,093	+		CCNA_01145	0.88	-1.9
1,250,125	+		CCNA_01145	0.90	-0.8
1,250,138	-				+0.3
1,250,155	+				-0.0
1,250,168	-				-1.9
1,250,205	-				+0.1
1,250,227	-				+0.6
1,250,273	+				-2.0
1,250,273	+				-2.9
1,250,273	+				+0.3
1,250,281	-				-0.9
1,250,282	+				-0.1
1,250,339	+				-2.0
1,250,339	+				-0.2
1,250,347	-				-2.5
1,250,347	-				+0.0
1,250,371	-				-0.3
1,250,374	+				-0.6
1,250,471	-				+0.3
1,250,539	-				+0.1
1,250,546	+				-1.6
1,250,553	+				+0.2
1,250,554	+				-0.7
1,250,578	-				-2.3
1,250,584	-				-1.0
1,250,599	+				-1.3
1,250,609	+		CCNA_01147	0.10	-0.5
1,250,679	+		CCNA_01147	0.23	-2.1
1,250,704	+		CCNA_01147	0.27	-0.2
1,250,754	-		CCNA_01147	0.36	-0.3
1,250,756	+		CCNA_01147	0.37	-0.4
1,250,792	+		CCNA_01147	0.43	+0.2
1,250,792	+		CCNA_01147	0.43	-0.5
1,250,802	+		CCNA_01147	0.45	-1.7
1,250,847	+		CCNA_01147	0.53	+0.3
1,250,847	-		CCNA_01147	0.53	-2.6
1,250,853	+		CCNA_01147	0.54	-0.7
1,250,855	-		CCNA_01147	0.55	-2.0
1,250,878	+		CCNA_01147	0.59	-1.1
1,250,896	-		CCNA_01147	0.62	-2.3
1,250,908	+		CCNA_01147	0.64	+0.4
1,250,916	-		CCNA_01147	0.66	-0.8
1,250,916	-		CCNA_01147	0.66	+1.7
1,250,918	+		CCNA_01147	0.66	-0.4
1,250,969	-		CCNA_01147	0.76	-2.0
1,251,033	-		CCNA_01147	0.87	-1.0
1,251,039	+		CCNA_01147	0.88	-0.6
1,251,039	+		CCNA_01147	0.88	-1.5
1,251,039	+		CCNA_01147	0.88	-0.8
1,251,045	-		CCNA_01147	0.89	-1.0
1,251,047	-		CCNA_01147	0.90	-1.7
1,251,060	+				+0.7
1,251,128	-				-0.7
1,251,204	+				-0.9
1,251,204	+				-0.2
1,251,204	+				-1.3
1,251,209	-				-2.2
1,251,211	+		CCNA_01148	0.11	-1.2
1,251,212	-		CCNA_01148	0.11	-0.5
1,251,212	-		CCNA_01148	0.11	-0.7
1,251,220	+		CCNA_01148	0.16	-0.5
1,251,221	+		CCNA_01148	0.16	-1.8
1,251,221	+		CCNA_01148	0.16	-1.0
1,251,221	+		CCNA_01148	0.16	-0.5
1,251,221	+		CCNA_01148	0.16	-0.6
1,251,228	-		CCNA_01148	0.20	-0.6
1,251,228	-		CCNA_01148	0.20	-0.7
1,251,228	-		CCNA_01148	0.20	-1.3
1,251,229	-		CCNA_01148	0.21	+0.7
1,251,229	-		CCNA_01148	0.21	-0.5
1,251,231	+		CCNA_01148	0.22	-1.1
1,251,231	+		CCNA_01148	0.22	+1.2
1,251,231	+		CCNA_01148	0.22	-1.6
1,251,238	+		CCNA_01148	0.26	-1.0
1,251,239	-		CCNA_01148	0.27	-1.9
1,251,269	-		CCNA_01148	0.44	+0.9
1,251,269	-		CCNA_01148	0.44	+1.3
1,251,269	-		CCNA_01148	0.44	+0.7
1,251,281	-		CCNA_01148	0.50	-0.1