Experiment: nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3952 and Ac3H11_3953 are separated by 199 nucleotides Ac3H11_3953 and Ac3H11_3954 are separated by 34 nucleotides
Ac3H11_3952 - Permease of the drug/metabolite transporter (DMT) superfamily, at 175,967 to 176,896
_3952
Ac3H11_3953 - D-galactarate dehydratase (EC 4.2.1.42), at 177,096 to 178,673
_3953
Ac3H11_3954 - hypothetical protein, not 6-phosphogluconolactonase, at 178,708 to 179,739
_3954
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 176.196 kb on + strand, within Ac3H11_3952 at 176.197 kb on - strand, within Ac3H11_3952 at 176.344 kb on - strand, within Ac3H11_3952 at 176.509 kb on - strand, within Ac3H11_3952 at 176.509 kb on - strand, within Ac3H11_3952 at 176.581 kb on + strand, within Ac3H11_3952 at 176.582 kb on - strand, within Ac3H11_3952 at 176.584 kb on - strand, within Ac3H11_3952 at 176.598 kb on + strand, within Ac3H11_3952 at 176.598 kb on + strand, within Ac3H11_3952 at 176.599 kb on - strand, within Ac3H11_3952 at 176.599 kb on - strand, within Ac3H11_3952 at 176.599 kb on - strand, within Ac3H11_3952 at 176.599 kb on - strand, within Ac3H11_3952 at 176.611 kb on - strand, within Ac3H11_3952 at 176.611 kb on - strand, within Ac3H11_3952 at 176.611 kb on - strand, within Ac3H11_3952 at 176.611 kb on - strand, within Ac3H11_3952 at 176.611 kb on - strand, within Ac3H11_3952 at 176.620 kb on + strand, within Ac3H11_3952 at 176.621 kb on - strand, within Ac3H11_3952 at 176.621 kb on - strand, within Ac3H11_3952 at 176.944 kb on - strand at 176.972 kb on + strand at 177.094 kb on + strand at 177.095 kb on - strand at 177.398 kb on + strand, within Ac3H11_3953 at 177.398 kb on + strand, within Ac3H11_3953 at 177.399 kb on - strand, within Ac3H11_3953 at 177.433 kb on + strand, within Ac3H11_3953 at 177.434 kb on - strand, within Ac3H11_3953 at 177.434 kb on - strand, within Ac3H11_3953 at 177.434 kb on - strand, within Ac3H11_3953 at 177.591 kb on + strand, within Ac3H11_3953 at 178.153 kb on + strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.192 kb on + strand, within Ac3H11_3953 at 178.331 kb on - strand, within Ac3H11_3953 at 178.518 kb on + strand at 178.519 kb on - strand at 178.899 kb on + strand, within Ac3H11_3954 at 178.900 kb on - strand, within Ac3H11_3954 at 178.985 kb on + strand, within Ac3H11_3954 at 178.986 kb on - strand, within Ac3H11_3954 at 179.351 kb on + strand, within Ac3H11_3954 at 179.351 kb on + strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.579 kb on + strand, within Ac3H11_3954 at 179.580 kb on - strand, within Ac3H11_3954 at 179.580 kb on - strand, within Ac3H11_3954
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 100 mM remove 176,196 + Ac3H11_3952 0.25 +0.2 176,197 - Ac3H11_3952 0.25 +0.2 176,344 - Ac3H11_3952 0.41 -1.1 176,509 - Ac3H11_3952 0.58 -2.0 176,509 - Ac3H11_3952 0.58 -0.2 176,581 + Ac3H11_3952 0.66 -0.5 176,582 - Ac3H11_3952 0.66 -2.5 176,584 - Ac3H11_3952 0.66 +0.6 176,598 + Ac3H11_3952 0.68 +2.0 176,598 + Ac3H11_3952 0.68 -0.0 176,599 - Ac3H11_3952 0.68 +0.5 176,599 - Ac3H11_3952 0.68 +0.8 176,599 - Ac3H11_3952 0.68 -2.0 176,599 - Ac3H11_3952 0.68 -0.6 176,611 - Ac3H11_3952 0.69 +1.6 176,611 - Ac3H11_3952 0.69 -1.3 176,611 - Ac3H11_3952 0.69 -0.2 176,611 - Ac3H11_3952 0.69 -0.3 176,611 - Ac3H11_3952 0.69 +0.7 176,620 + Ac3H11_3952 0.70 -0.3 176,621 - Ac3H11_3952 0.70 +0.4 176,621 - Ac3H11_3952 0.70 +0.6 176,944 - +2.7 176,972 + +1.3 177,094 + +1.0 177,095 - +1.5 177,398 + Ac3H11_3953 0.19 -0.3 177,398 + Ac3H11_3953 0.19 -0.6 177,399 - Ac3H11_3953 0.19 -0.1 177,433 + Ac3H11_3953 0.21 -0.2 177,434 - Ac3H11_3953 0.21 -0.4 177,434 - Ac3H11_3953 0.21 +1.8 177,434 - Ac3H11_3953 0.21 +0.1 177,591 + Ac3H11_3953 0.31 -0.8 178,153 + Ac3H11_3953 0.67 +0.2 178,154 - Ac3H11_3953 0.67 +0.6 178,154 - Ac3H11_3953 0.67 -3.2 178,154 - Ac3H11_3953 0.67 -0.3 178,154 - Ac3H11_3953 0.67 -0.4 178,154 - Ac3H11_3953 0.67 +0.0 178,192 + Ac3H11_3953 0.69 -0.3 178,331 - Ac3H11_3953 0.78 +0.3 178,518 + +1.5 178,519 - -0.3 178,899 + Ac3H11_3954 0.19 +0.6 178,900 - Ac3H11_3954 0.19 -1.1 178,985 + Ac3H11_3954 0.27 -0.6 178,986 - Ac3H11_3954 0.27 -0.1 179,351 + Ac3H11_3954 0.62 +0.6 179,351 + Ac3H11_3954 0.62 -0.2 179,352 - Ac3H11_3954 0.62 -0.2 179,352 - Ac3H11_3954 0.62 +2.1 179,352 - Ac3H11_3954 0.62 +0.7 179,352 - Ac3H11_3954 0.62 -2.8 179,579 + Ac3H11_3954 0.84 +1.0 179,580 - Ac3H11_3954 0.84 +0.0 179,580 - Ac3H11_3954 0.84 +0.6
Or see this region's nucleotide sequence