Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3728

Experiment: nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3726 and Ac3H11_3727 are separated by 86 nucleotidesAc3H11_3727 and Ac3H11_3728 are separated by 29 nucleotidesAc3H11_3728 and Ac3H11_3729 overlap by 4 nucleotides Ac3H11_3726 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 86,363 to 87,361 _3726 Ac3H11_3727 - Creatinine amidohydrolase (EC 3.5.2.10), at 87,448 to 88,311 _3727 Ac3H11_3728 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 88,341 to 88,805 _3728 Ac3H11_3729 - Cytosine deaminase (EC 3.5.4.1), at 88,802 to 90,130 _3729 Position (kb) 88 89Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 87.367 kb on + strandat 87.367 kb on + strandat 87.367 kb on + strandat 87.367 kb on + strandat 87.716 kb on + strand, within Ac3H11_3727at 87.717 kb on - strand, within Ac3H11_3727at 87.981 kb on - strand, within Ac3H11_3727at 88.076 kb on + strand, within Ac3H11_3727at 88.076 kb on + strand, within Ac3H11_3727at 88.077 kb on - strand, within Ac3H11_3727at 88.077 kb on - strand, within Ac3H11_3727at 88.298 kb on + strandat 88.298 kb on + strandat 88.298 kb on + strandat 88.299 kb on - strandat 88.299 kb on - strandat 88.357 kb on + strandat 88.357 kb on + strandat 88.357 kb on + strandat 88.501 kb on + strand, within Ac3H11_3728at 88.501 kb on + strand, within Ac3H11_3728at 88.502 kb on - strand, within Ac3H11_3728at 88.502 kb on - strand, within Ac3H11_3728at 88.576 kb on + strand, within Ac3H11_3728at 88.576 kb on + strand, within Ac3H11_3728at 88.576 kb on + strand, within Ac3H11_3728at 88.577 kb on - strand, within Ac3H11_3728at 88.577 kb on - strand, within Ac3H11_3728at 88.577 kb on - strand, within Ac3H11_3728at 88.577 kb on - strand, within Ac3H11_3728at 88.727 kb on - strand, within Ac3H11_3728at 89.169 kb on - strand, within Ac3H11_3729at 89.169 kb on - strand, within Ac3H11_3729

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 100 mM
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87,367 + -3.1
87,367 + -0.0
87,367 + +0.4
87,367 + -1.0
87,716 + Ac3H11_3727 0.31 -2.1
87,717 - Ac3H11_3727 0.31 -0.1
87,981 - Ac3H11_3727 0.62 -0.2
88,076 + Ac3H11_3727 0.73 +0.4
88,076 + Ac3H11_3727 0.73 -0.7
88,077 - Ac3H11_3727 0.73 -0.8
88,077 - Ac3H11_3727 0.73 +1.2
88,298 + -3.2
88,298 + -0.2
88,298 + +0.5
88,299 - +0.3
88,299 - -0.9
88,357 + +0.5
88,357 + -0.8
88,357 + +0.8
88,501 + Ac3H11_3728 0.34 -0.9
88,501 + Ac3H11_3728 0.34 -0.3
88,502 - Ac3H11_3728 0.35 +0.5
88,502 - Ac3H11_3728 0.35 -0.7
88,576 + Ac3H11_3728 0.51 +1.3
88,576 + Ac3H11_3728 0.51 +2.3
88,576 + Ac3H11_3728 0.51 -1.2
88,577 - Ac3H11_3728 0.51 -2.6
88,577 - Ac3H11_3728 0.51 -0.0
88,577 - Ac3H11_3728 0.51 -0.5
88,577 - Ac3H11_3728 0.51 -0.3
88,727 - Ac3H11_3728 0.83 -1.6
89,169 - Ac3H11_3729 0.28 -2.8
89,169 - Ac3H11_3729 0.28 +3.0

Or see this region's nucleotide sequence