Experiment: nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1707 and Ac3H11_1708 are separated by 19 nucleotides Ac3H11_1708 and Ac3H11_1709 are separated by 196 nucleotides Ac3H11_1709 and Ac3H11_1710 are separated by 24 nucleotides Ac3H11_1710 and Ac3H11_1711 are separated by 46 nucleotides
Ac3H11_1707 - FIG00933533: hypothetical protein, at 308,438 to 310,291
_1707
Ac3H11_1708 - FIG00932121: hypothetical protein, at 310,311 to 310,616
_1708
Ac3H11_1709 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 310,813 to 311,400
_1709
Ac3H11_1710 - Virulence factor mviM, at 311,425 to 312,129
_1710
Ac3H11_1711 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 312,176 to 313,357
_1711
Position (kb) 310
311
312 Strain fitness (log2 ratio) -1
0
1
2 at 310.147 kb on + strand at 310.147 kb on + strand at 310.148 kb on - strand at 310.185 kb on + strand at 310.185 kb on + strand at 310.185 kb on + strand at 310.186 kb on - strand at 310.186 kb on - strand at 310.186 kb on - strand at 310.221 kb on + strand at 310.335 kb on - strand at 310.335 kb on - strand at 310.335 kb on - strand at 310.335 kb on - strand at 310.335 kb on - strand at 310.410 kb on + strand, within Ac3H11_1708 at 310.411 kb on - strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.420 kb on - strand, within Ac3H11_1708 at 310.420 kb on - strand, within Ac3H11_1708 at 310.420 kb on - strand, within Ac3H11_1708 at 310.420 kb on - strand, within Ac3H11_1708 at 310.434 kb on + strand, within Ac3H11_1708 at 310.434 kb on + strand, within Ac3H11_1708 at 310.434 kb on + strand, within Ac3H11_1708 at 310.435 kb on - strand, within Ac3H11_1708 at 310.435 kb on - strand, within Ac3H11_1708 at 310.435 kb on - strand, within Ac3H11_1708 at 310.435 kb on - strand, within Ac3H11_1708 at 310.488 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.501 kb on - strand, within Ac3H11_1708 at 310.501 kb on - strand, within Ac3H11_1708 at 310.815 kb on - strand at 310.857 kb on - strand at 311.087 kb on + strand, within Ac3H11_1709 at 311.400 kb on + strand at 311.400 kb on + strand at 311.400 kb on + strand at 311.400 kb on + strand at 311.400 kb on + strand at 311.401 kb on - strand at 311.474 kb on + strand at 311.475 kb on - strand at 311.518 kb on + strand, within Ac3H11_1710 at 311.519 kb on - strand, within Ac3H11_1710 at 312.127 kb on + strand at 312.128 kb on - strand at 312.145 kb on + strand at 312.145 kb on + strand at 312.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 100 mM remove 310,147 + +1.3 310,147 + +0.5 310,148 - -0.2 310,185 + -1.6 310,185 + -1.1 310,185 + -0.0 310,186 - -0.8 310,186 - +0.4 310,186 - +0.5 310,221 + -1.4 310,335 - +1.0 310,335 - +0.8 310,335 - -1.6 310,335 - +0.1 310,335 - -1.3 310,410 + Ac3H11_1708 0.32 -1.4 310,411 - Ac3H11_1708 0.33 -1.7 310,419 + Ac3H11_1708 0.35 -0.7 310,419 + Ac3H11_1708 0.35 -0.7 310,419 + Ac3H11_1708 0.35 +0.2 310,419 + Ac3H11_1708 0.35 +0.0 310,419 + Ac3H11_1708 0.35 -1.3 310,419 + Ac3H11_1708 0.35 +0.4 310,420 - Ac3H11_1708 0.36 -1.0 310,420 - Ac3H11_1708 0.36 -0.7 310,420 - Ac3H11_1708 0.36 -0.8 310,420 - Ac3H11_1708 0.36 +0.5 310,434 + Ac3H11_1708 0.40 -1.0 310,434 + Ac3H11_1708 0.40 -0.2 310,434 + Ac3H11_1708 0.40 +0.4 310,435 - Ac3H11_1708 0.41 -0.4 310,435 - Ac3H11_1708 0.41 +0.5 310,435 - Ac3H11_1708 0.41 -0.3 310,435 - Ac3H11_1708 0.41 -1.0 310,488 + Ac3H11_1708 0.58 -0.7 310,500 + Ac3H11_1708 0.62 -0.2 310,500 + Ac3H11_1708 0.62 -0.6 310,500 + Ac3H11_1708 0.62 -0.1 310,500 + Ac3H11_1708 0.62 -0.7 310,500 + Ac3H11_1708 0.62 -1.5 310,501 - Ac3H11_1708 0.62 +2.4 310,501 - Ac3H11_1708 0.62 +0.2 310,815 - +0.4 310,857 - -1.0 311,087 + Ac3H11_1709 0.47 +1.2 311,400 + -0.9 311,400 + -0.4 311,400 + +0.1 311,400 + -0.4 311,400 + +0.4 311,401 - +0.5 311,474 + -1.7 311,475 - -0.5 311,518 + Ac3H11_1710 0.13 +1.6 311,519 - Ac3H11_1710 0.13 +1.6 312,127 + -1.2 312,128 - -0.8 312,145 + -0.6 312,145 + -0.6 312,146 - -0.2
Or see this region's nucleotide sequence