Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1167

Experiment: nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1165 and Ac3H11_1166 are separated by 76 nucleotidesAc3H11_1166 and Ac3H11_1167 are separated by 19 nucleotidesAc3H11_1167 and Ac3H11_1168 overlap by 2 nucleotidesAc3H11_1168 and Ac3H11_1169 are separated by 211 nucleotides Ac3H11_1165 - Transcriptional regulator, LysR family, at 1,732 to 2,685 _1165 Ac3H11_1166 - hypothetical protein, at 2,762 to 3,160 _1166 Ac3H11_1167 - Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 3,180 to 4,070 _1167 Ac3H11_1168 - hypothetical protein, at 4,069 to 4,191 _1168 Ac3H11_1169 - TPR Domain containing protein, at 4,403 to 7,969 _1169 Position (kb) 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2.299 kb on + strand, within Ac3H11_1165at 2.300 kb on - strand, within Ac3H11_1165at 2.300 kb on - strand, within Ac3H11_1165at 2.300 kb on - strand, within Ac3H11_1165at 2.341 kb on + strand, within Ac3H11_1165at 2.341 kb on + strand, within Ac3H11_1165at 2.341 kb on + strand, within Ac3H11_1165at 2.342 kb on - strand, within Ac3H11_1165at 2.342 kb on - strand, within Ac3H11_1165at 2.371 kb on + strand, within Ac3H11_1165at 2.371 kb on + strand, within Ac3H11_1165at 2.371 kb on + strand, within Ac3H11_1165at 2.372 kb on - strand, within Ac3H11_1165at 2.584 kb on + strand, within Ac3H11_1165at 2.584 kb on + strand, within Ac3H11_1165at 2.585 kb on - strand, within Ac3H11_1165at 2.585 kb on - strand, within Ac3H11_1165at 2.585 kb on - strand, within Ac3H11_1165at 2.585 kb on - strand, within Ac3H11_1165at 2.585 kb on - strand, within Ac3H11_1165at 2.585 kb on - strand, within Ac3H11_1165at 2.606 kb on - strandat 2.683 kb on + strandat 2.684 kb on - strandat 2.698 kb on - strandat 2.846 kb on + strand, within Ac3H11_1166at 2.847 kb on - strand, within Ac3H11_1166at 2.868 kb on + strand, within Ac3H11_1166at 2.868 kb on + strand, within Ac3H11_1166at 2.869 kb on - strand, within Ac3H11_1166at 2.869 kb on - strand, within Ac3H11_1166at 2.869 kb on - strand, within Ac3H11_1166at 2.869 kb on - strand, within Ac3H11_1166at 2.950 kb on + strand, within Ac3H11_1166at 2.951 kb on - strand, within Ac3H11_1166at 2.987 kb on - strand, within Ac3H11_1166at 3.004 kb on + strand, within Ac3H11_1166at 3.005 kb on - strand, within Ac3H11_1166at 3.005 kb on - strand, within Ac3H11_1166at 3.054 kb on + strand, within Ac3H11_1166at 3.077 kb on + strand, within Ac3H11_1166at 3.077 kb on + strand, within Ac3H11_1166at 3.077 kb on + strand, within Ac3H11_1166at 3.077 kb on + strand, within Ac3H11_1166at 3.078 kb on - strand, within Ac3H11_1166at 3.102 kb on - strand, within Ac3H11_1166at 3.115 kb on + strand, within Ac3H11_1166at 3.395 kb on - strand, within Ac3H11_1167at 3.395 kb on - strand, within Ac3H11_1167at 3.538 kb on + strand, within Ac3H11_1167at 3.539 kb on - strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.595 kb on + strand, within Ac3H11_1167at 3.652 kb on + strand, within Ac3H11_1167at 3.652 kb on + strand, within Ac3H11_1167at 3.652 kb on + strand, within Ac3H11_1167at 3.653 kb on - strand, within Ac3H11_1167at 3.754 kb on + strand, within Ac3H11_1167at 3.754 kb on + strand, within Ac3H11_1167at 3.754 kb on + strand, within Ac3H11_1167at 3.754 kb on + strand, within Ac3H11_1167at 3.754 kb on + strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.755 kb on - strand, within Ac3H11_1167at 3.808 kb on + strand, within Ac3H11_1167at 3.808 kb on + strand, within Ac3H11_1167at 3.808 kb on + strand, within Ac3H11_1167at 3.808 kb on + strand, within Ac3H11_1167at 3.808 kb on + strand, within Ac3H11_1167at 3.808 kb on + strand, within Ac3H11_1167at 3.808 kb on + strand, within Ac3H11_1167at 3.808 kb on + strand, within Ac3H11_1167at 3.809 kb on - strand, within Ac3H11_1167at 3.809 kb on - strand, within Ac3H11_1167at 3.809 kb on - strand, within Ac3H11_1167at 3.809 kb on - strand, within Ac3H11_1167at 3.868 kb on + strand, within Ac3H11_1167at 3.868 kb on + strand, within Ac3H11_1167at 3.869 kb on - strand, within Ac3H11_1167at 3.869 kb on - strand, within Ac3H11_1167at 3.976 kb on + strand, within Ac3H11_1167at 3.977 kb on - strand, within Ac3H11_1167at 4.164 kb on + strand, within Ac3H11_1168at 4.164 kb on + strand, within Ac3H11_1168at 4.164 kb on + strand, within Ac3H11_1168at 4.165 kb on - strand, within Ac3H11_1168at 4.165 kb on - strand, within Ac3H11_1168at 4.165 kb on - strand, within Ac3H11_1168at 4.189 kb on + strandat 4.189 kb on + strandat 4.189 kb on + strandat 4.190 kb on - strandat 4.252 kb on + strandat 4.253 kb on - strandat 4.963 kb on + strand, within Ac3H11_1169

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 100 mM
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2,299 + Ac3H11_1165 0.59 +1.2
2,300 - Ac3H11_1165 0.60 +0.4
2,300 - Ac3H11_1165 0.60 +0.8
2,300 - Ac3H11_1165 0.60 -2.0
2,341 + Ac3H11_1165 0.64 +0.2
2,341 + Ac3H11_1165 0.64 +0.1
2,341 + Ac3H11_1165 0.64 -1.3
2,342 - Ac3H11_1165 0.64 -1.2
2,342 - Ac3H11_1165 0.64 -1.1
2,371 + Ac3H11_1165 0.67 -1.4
2,371 + Ac3H11_1165 0.67 -2.8
2,371 + Ac3H11_1165 0.67 +0.1
2,372 - Ac3H11_1165 0.67 -0.4
2,584 + Ac3H11_1165 0.89 +0.5
2,584 + Ac3H11_1165 0.89 +0.0
2,585 - Ac3H11_1165 0.89 -0.8
2,585 - Ac3H11_1165 0.89 -0.9
2,585 - Ac3H11_1165 0.89 -0.4
2,585 - Ac3H11_1165 0.89 +0.8
2,585 - Ac3H11_1165 0.89 -0.3
2,585 - Ac3H11_1165 0.89 -0.1
2,606 - -0.2
2,683 + -0.6
2,684 - +0.6
2,698 - -1.5
2,846 + Ac3H11_1166 0.21 +0.3
2,847 - Ac3H11_1166 0.21 -0.5
2,868 + Ac3H11_1166 0.27 -0.7
2,868 + Ac3H11_1166 0.27 +0.5
2,869 - Ac3H11_1166 0.27 -0.7
2,869 - Ac3H11_1166 0.27 -0.1
2,869 - Ac3H11_1166 0.27 -0.6
2,869 - Ac3H11_1166 0.27 +0.7
2,950 + Ac3H11_1166 0.47 -1.0
2,951 - Ac3H11_1166 0.47 -0.5
2,987 - Ac3H11_1166 0.56 +2.8
3,004 + Ac3H11_1166 0.61 -2.0
3,005 - Ac3H11_1166 0.61 +0.2
3,005 - Ac3H11_1166 0.61 +1.0
3,054 + Ac3H11_1166 0.73 -2.5
3,077 + Ac3H11_1166 0.79 +0.2
3,077 + Ac3H11_1166 0.79 +0.6
3,077 + Ac3H11_1166 0.79 -3.0
3,077 + Ac3H11_1166 0.79 +0.9
3,078 - Ac3H11_1166 0.79 +0.9
3,102 - Ac3H11_1166 0.85 -0.5
3,115 + Ac3H11_1166 0.88 +0.2
3,395 - Ac3H11_1167 0.24 -0.5
3,395 - Ac3H11_1167 0.24 -0.9
3,538 + Ac3H11_1167 0.40 -0.2
3,539 - Ac3H11_1167 0.40 -0.1
3,595 + Ac3H11_1167 0.47 -0.4
3,595 + Ac3H11_1167 0.47 +0.4
3,595 + Ac3H11_1167 0.47 -0.7
3,595 + Ac3H11_1167 0.47 -0.6
3,595 + Ac3H11_1167 0.47 -1.7
3,595 + Ac3H11_1167 0.47 -0.6
3,595 + Ac3H11_1167 0.47 +0.5
3,595 + Ac3H11_1167 0.47 -2.0
3,595 + Ac3H11_1167 0.47 -0.4
3,595 + Ac3H11_1167 0.47 +0.4
3,652 + Ac3H11_1167 0.53 -0.7
3,652 + Ac3H11_1167 0.53 -1.0
3,652 + Ac3H11_1167 0.53 +0.8
3,653 - Ac3H11_1167 0.53 -1.9
3,754 + Ac3H11_1167 0.64 -3.3
3,754 + Ac3H11_1167 0.64 -0.5
3,754 + Ac3H11_1167 0.64 -0.1
3,754 + Ac3H11_1167 0.64 -3.2
3,754 + Ac3H11_1167 0.64 -0.5
3,755 - Ac3H11_1167 0.65 -2.2
3,755 - Ac3H11_1167 0.65 +0.1
3,755 - Ac3H11_1167 0.65 +0.6
3,755 - Ac3H11_1167 0.65 -1.9
3,755 - Ac3H11_1167 0.65 +0.1
3,755 - Ac3H11_1167 0.65 -0.7
3,755 - Ac3H11_1167 0.65 -0.4
3,755 - Ac3H11_1167 0.65 +1.7
3,755 - Ac3H11_1167 0.65 -1.4
3,755 - Ac3H11_1167 0.65 -0.3
3,808 + Ac3H11_1167 0.70 -0.5
3,808 + Ac3H11_1167 0.70 -0.7
3,808 + Ac3H11_1167 0.70 -0.2
3,808 + Ac3H11_1167 0.70 +0.5
3,808 + Ac3H11_1167 0.70 +0.3
3,808 + Ac3H11_1167 0.70 -0.1
3,808 + Ac3H11_1167 0.70 +0.2
3,808 + Ac3H11_1167 0.70 -0.9
3,809 - Ac3H11_1167 0.71 -0.5
3,809 - Ac3H11_1167 0.71 +0.1
3,809 - Ac3H11_1167 0.71 -0.7
3,809 - Ac3H11_1167 0.71 +2.0
3,868 + Ac3H11_1167 0.77 +0.4
3,868 + Ac3H11_1167 0.77 -0.5
3,869 - Ac3H11_1167 0.77 -1.7
3,869 - Ac3H11_1167 0.77 -1.2
3,976 + Ac3H11_1167 0.89 -0.1
3,977 - Ac3H11_1167 0.89 -1.1
4,164 + Ac3H11_1168 0.77 -0.1
4,164 + Ac3H11_1168 0.77 -0.7
4,164 + Ac3H11_1168 0.77 +1.2
4,165 - Ac3H11_1168 0.78 +1.2
4,165 - Ac3H11_1168 0.78 +0.1
4,165 - Ac3H11_1168 0.78 +0.8
4,189 + -0.8
4,189 + -1.6
4,189 + -1.7
4,190 - +0.5
4,252 + +0.4
4,253 - +0.5
4,963 + Ac3H11_1169 0.16 -0.1

Or see this region's nucleotide sequence