Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1092

Experiment: nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1091 and Ac3H11_1092 are separated by 52 nucleotidesAc3H11_1092 and Ac3H11_1093 are separated by 13 nucleotides Ac3H11_1091 - GNAT family acetyltransferase PA5433, at 25,931 to 26,737 _1091 Ac3H11_1092 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 26,790 to 28,286 _1092 Ac3H11_1093 - Acetylornithine deacetylase (EC 3.5.1.16), at 28,300 to 29,535 _1093 Position (kb) 26 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 25.816 kb on + strandat 25.860 kb on + strandat 25.860 kb on + strandat 26.091 kb on + strand, within Ac3H11_1091at 26.091 kb on + strand, within Ac3H11_1091at 26.092 kb on - strand, within Ac3H11_1091at 26.217 kb on + strand, within Ac3H11_1091at 26.217 kb on + strand, within Ac3H11_1091at 26.217 kb on + strand, within Ac3H11_1091at 26.217 kb on + strand, within Ac3H11_1091at 26.218 kb on - strand, within Ac3H11_1091at 26.218 kb on - strand, within Ac3H11_1091at 26.416 kb on - strand, within Ac3H11_1091at 26.460 kb on + strand, within Ac3H11_1091at 26.461 kb on - strand, within Ac3H11_1091at 26.461 kb on - strand, within Ac3H11_1091at 26.461 kb on - strand, within Ac3H11_1091at 26.461 kb on - strand, within Ac3H11_1091at 26.801 kb on + strandat 26.801 kb on + strandat 26.801 kb on + strandat 26.801 kb on + strandat 26.802 kb on - strandat 27.007 kb on - strand, within Ac3H11_1092at 27.031 kb on - strand, within Ac3H11_1092at 27.031 kb on - strand, within Ac3H11_1092at 27.031 kb on - strand, within Ac3H11_1092at 27.031 kb on - strand, within Ac3H11_1092at 27.031 kb on - strand, within Ac3H11_1092at 27.286 kb on - strand, within Ac3H11_1092at 27.588 kb on + strand, within Ac3H11_1092at 27.588 kb on + strand, within Ac3H11_1092at 27.588 kb on + strand, within Ac3H11_1092at 27.589 kb on - strand, within Ac3H11_1092at 27.610 kb on - strand, within Ac3H11_1092at 27.699 kb on + strand, within Ac3H11_1092at 27.700 kb on - strand, within Ac3H11_1092at 27.700 kb on - strand, within Ac3H11_1092at 27.774 kb on + strand, within Ac3H11_1092at 27.774 kb on + strand, within Ac3H11_1092at 27.774 kb on + strand, within Ac3H11_1092at 27.775 kb on - strand, within Ac3H11_1092at 27.775 kb on - strand, within Ac3H11_1092at 27.775 kb on - strand, within Ac3H11_1092at 27.775 kb on - strand, within Ac3H11_1092at 27.775 kb on - strand, within Ac3H11_1092at 27.973 kb on - strand, within Ac3H11_1092at 28.123 kb on - strand, within Ac3H11_1092at 28.440 kb on + strand, within Ac3H11_1093at 28.454 kb on + strand, within Ac3H11_1093at 28.454 kb on + strand, within Ac3H11_1093at 28.455 kb on - strand, within Ac3H11_1093at 28.455 kb on - strandat 28.773 kb on - strand, within Ac3H11_1093at 28.814 kb on + strand, within Ac3H11_1093at 28.814 kb on + strand, within Ac3H11_1093at 28.814 kb on + strandat 28.815 kb on - strand, within Ac3H11_1093at 28.815 kb on - strand, within Ac3H11_1093at 28.815 kb on - strand, within Ac3H11_1093at 29.057 kb on + strand, within Ac3H11_1093at 29.057 kb on + strand, within Ac3H11_1093at 29.171 kb on + strand, within Ac3H11_1093at 29.171 kb on + strand, within Ac3H11_1093at 29.172 kb on - strand, within Ac3H11_1093at 29.172 kb on - strand, within Ac3H11_1093at 29.172 kb on - strand, within Ac3H11_1093at 29.172 kb on - strand, within Ac3H11_1093at 29.172 kb on - strand, within Ac3H11_1093at 29.282 kb on + strand, within Ac3H11_1093

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 100 mM
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25,816 + -1.0
25,860 + -1.4
25,860 + +0.6
26,091 + Ac3H11_1091 0.20 +0.2
26,091 + Ac3H11_1091 0.20 -0.2
26,092 - Ac3H11_1091 0.20 +0.1
26,217 + Ac3H11_1091 0.35 +1.0
26,217 + Ac3H11_1091 0.35 -0.1
26,217 + Ac3H11_1091 0.35 -0.5
26,217 + Ac3H11_1091 0.35 +2.2
26,218 - Ac3H11_1091 0.36 -0.1
26,218 - Ac3H11_1091 0.36 +0.5
26,416 - Ac3H11_1091 0.60 +1.7
26,460 + Ac3H11_1091 0.66 +0.6
26,461 - Ac3H11_1091 0.66 -0.4
26,461 - Ac3H11_1091 0.66 -1.6
26,461 - Ac3H11_1091 0.66 -0.7
26,461 - Ac3H11_1091 0.66 -0.7
26,801 + -1.2
26,801 + +0.5
26,801 + -0.2
26,801 + -0.8
26,802 - +0.4
27,007 - Ac3H11_1092 0.14 -0.1
27,031 - Ac3H11_1092 0.16 +0.1
27,031 - Ac3H11_1092 0.16 -0.6
27,031 - Ac3H11_1092 0.16 +0.1
27,031 - Ac3H11_1092 0.16 -1.9
27,031 - Ac3H11_1092 0.16 -0.7
27,286 - Ac3H11_1092 0.33 +0.2
27,588 + Ac3H11_1092 0.53 -0.7
27,588 + Ac3H11_1092 0.53 +1.0
27,588 + Ac3H11_1092 0.53 -0.7
27,589 - Ac3H11_1092 0.53 -0.1
27,610 - Ac3H11_1092 0.55 +0.6
27,699 + Ac3H11_1092 0.61 -0.2
27,700 - Ac3H11_1092 0.61 +0.7
27,700 - Ac3H11_1092 0.61 -0.1
27,774 + Ac3H11_1092 0.66 +0.2
27,774 + Ac3H11_1092 0.66 +0.7
27,774 + Ac3H11_1092 0.66 +1.0
27,775 - Ac3H11_1092 0.66 -0.6
27,775 - Ac3H11_1092 0.66 -1.2
27,775 - Ac3H11_1092 0.66 -1.4
27,775 - Ac3H11_1092 0.66 +0.2
27,775 - Ac3H11_1092 0.66 -1.0
27,973 - Ac3H11_1092 0.79 -0.8
28,123 - Ac3H11_1092 0.89 +1.2
28,440 + Ac3H11_1093 0.11 -1.9
28,454 + Ac3H11_1093 0.12 +0.6
28,454 + Ac3H11_1093 0.12 -0.4
28,455 - Ac3H11_1093 0.13 -1.2
28,455 - -0.4
28,773 - Ac3H11_1093 0.38 +0.2
28,814 + Ac3H11_1093 0.42 -1.1
28,814 + Ac3H11_1093 0.42 -0.9
28,814 + +0.6
28,815 - Ac3H11_1093 0.42 -1.8
28,815 - Ac3H11_1093 0.42 +0.9
28,815 - Ac3H11_1093 0.42 -0.6
29,057 + Ac3H11_1093 0.61 +0.2
29,057 + Ac3H11_1093 0.61 -1.1
29,171 + Ac3H11_1093 0.70 -0.2
29,171 + Ac3H11_1093 0.70 +0.6
29,172 - Ac3H11_1093 0.71 +0.1
29,172 - Ac3H11_1093 0.71 -0.8
29,172 - Ac3H11_1093 0.71 +0.2
29,172 - Ac3H11_1093 0.71 -1.4
29,172 - Ac3H11_1093 0.71 -0.1
29,282 + Ac3H11_1093 0.79 +0.2

Or see this region's nucleotide sequence