Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26325

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26315 and AO353_26320 are separated by 5 nucleotidesAO353_26320 and AO353_26325 overlap by 14 nucleotidesAO353_26325 and AO353_26330 are separated by 1 nucleotidesAO353_26330 and AO353_26335 are separated by 161 nucleotides AO353_26315: AO353_26315 - hypothetical protein, at 5,779,471 to 5,779,971 _26315 AO353_26320: AO353_26320 - hypothetical protein, at 5,779,977 to 5,780,771 _26320 AO353_26325: AO353_26325 - phage replication protein, at 5,780,758 to 5,781,741 _26325 AO353_26330: AO353_26330 - Rha family transcriptional regulator, at 5,781,743 to 5,782,549 _26330 AO353_26335: AO353_26335 - hypothetical protein, at 5,782,711 to 5,782,917 _26335 Position (kb) 5780 5781 5782Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5779.823 kb on + strand, within AO353_26315at 5779.824 kb on - strand, within AO353_26315at 5779.905 kb on - strand, within AO353_26315at 5779.998 kb on + strandat 5780.030 kb on + strandat 5780.030 kb on + strandat 5780.038 kb on + strandat 5780.038 kb on + strandat 5780.038 kb on + strandat 5780.038 kb on + strandat 5780.038 kb on + strandat 5780.043 kb on - strandat 5780.233 kb on + strand, within AO353_26320at 5780.268 kb on - strand, within AO353_26320at 5780.377 kb on + strand, within AO353_26320at 5780.377 kb on + strand, within AO353_26320at 5780.378 kb on - strand, within AO353_26320at 5780.378 kb on - strand, within AO353_26320at 5780.649 kb on + strand, within AO353_26320at 5780.649 kb on + strand, within AO353_26320at 5780.649 kb on + strand, within AO353_26320at 5780.649 kb on + strand, within AO353_26320at 5780.649 kb on + strand, within AO353_26320at 5780.650 kb on - strand, within AO353_26320at 5780.650 kb on - strand, within AO353_26320at 5780.650 kb on - strand, within AO353_26320at 5780.650 kb on - strand, within AO353_26320at 5780.650 kb on - strand, within AO353_26320at 5780.650 kb on - strand, within AO353_26320at 5780.650 kb on - strand, within AO353_26320at 5780.699 kb on + strandat 5780.765 kb on + strandat 5780.765 kb on + strandat 5780.906 kb on + strand, within AO353_26325at 5780.906 kb on + strand, within AO353_26325at 5780.907 kb on - strand, within AO353_26325at 5780.907 kb on - strand, within AO353_26325at 5780.907 kb on - strand, within AO353_26325at 5781.080 kb on + strand, within AO353_26325at 5781.104 kb on + strand, within AO353_26325at 5781.104 kb on + strand, within AO353_26325at 5781.104 kb on + strand, within AO353_26325at 5781.104 kb on + strand, within AO353_26325at 5781.105 kb on - strand, within AO353_26325at 5781.105 kb on - strand, within AO353_26325at 5781.105 kb on - strand, within AO353_26325at 5781.105 kb on - strand, within AO353_26325at 5781.251 kb on - strand, within AO353_26325at 5781.251 kb on - strand, within AO353_26325at 5781.288 kb on + strand, within AO353_26325at 5781.361 kb on - strand, within AO353_26325at 5781.369 kb on + strand, within AO353_26325at 5781.370 kb on - strand, within AO353_26325at 5781.370 kb on - strand, within AO353_26325at 5781.413 kb on + strand, within AO353_26325at 5781.435 kb on + strand, within AO353_26325at 5781.436 kb on - strand, within AO353_26325at 5781.436 kb on - strand, within AO353_26325at 5781.489 kb on + strand, within AO353_26325at 5781.489 kb on + strand, within AO353_26325at 5781.490 kb on - strand, within AO353_26325at 5781.608 kb on + strandat 5781.608 kb on + strand, within AO353_26325at 5781.608 kb on + strand, within AO353_26325at 5781.608 kb on + strand, within AO353_26325at 5781.608 kb on + strand, within AO353_26325at 5781.608 kb on + strand, within AO353_26325at 5781.608 kb on + strand, within AO353_26325at 5781.608 kb on + strand, within AO353_26325at 5781.609 kb on - strand, within AO353_26325at 5781.656 kb on + strandat 5781.657 kb on - strandat 5781.734 kb on + strandat 5781.734 kb on + strandat 5781.734 kb on + strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.789 kb on + strandat 5781.789 kb on + strandat 5781.790 kb on - strandat 5781.844 kb on - strand, within AO353_26330at 5781.922 kb on - strand, within AO353_26330at 5781.922 kb on - strand, within AO353_26330at 5782.199 kb on + strand, within AO353_26330at 5782.199 kb on + strand, within AO353_26330at 5782.273 kb on + strand, within AO353_26330at 5782.276 kb on - strand, within AO353_26330at 5782.317 kb on + strand, within AO353_26330at 5782.317 kb on + strandat 5782.317 kb on + strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.350 kb on + strand, within AO353_26330at 5782.351 kb on - strand, within AO353_26330at 5782.351 kb on - strand, within AO353_26330at 5782.351 kb on - strand, within AO353_26330at 5782.370 kb on + strand, within AO353_26330at 5782.370 kb on + strand, within AO353_26330at 5782.371 kb on - strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.408 kb on + strand, within AO353_26330at 5782.493 kb on - strandat 5782.549 kb on + strandat 5782.549 kb on + strandat 5782.549 kb on + strandat 5782.550 kb on - strandat 5782.550 kb on - strandat 5782.563 kb on + strandat 5782.564 kb on - strandat 5782.564 kb on - strandat 5782.683 kb on + strandat 5782.683 kb on + strandat 5782.683 kb on + strandat 5782.712 kb on + strandat 5782.712 kb on + strandat 5782.712 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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5,779,823 + AO353_26315 0.70 +0.4
5,779,824 - AO353_26315 0.70 -0.7
5,779,905 - AO353_26315 0.87 -1.8
5,779,998 + +0.3
5,780,030 + +0.7
5,780,030 + -0.8
5,780,038 + +1.4
5,780,038 + -0.9
5,780,038 + -0.2
5,780,038 + -1.8
5,780,038 + -0.6
5,780,043 - -0.6
5,780,233 + AO353_26320 0.32 +0.7
5,780,268 - AO353_26320 0.37 +1.7
5,780,377 + AO353_26320 0.50 +0.5
5,780,377 + AO353_26320 0.50 +0.4
5,780,378 - AO353_26320 0.50 -0.5
5,780,378 - AO353_26320 0.50 +1.3
5,780,649 + AO353_26320 0.85 +1.1
5,780,649 + AO353_26320 0.85 +2.4
5,780,649 + AO353_26320 0.85 -1.1
5,780,649 + AO353_26320 0.85 -1.2
5,780,649 + AO353_26320 0.85 +0.5
5,780,650 - AO353_26320 0.85 +0.5
5,780,650 - AO353_26320 0.85 -0.3
5,780,650 - AO353_26320 0.85 -0.9
5,780,650 - AO353_26320 0.85 +1.8
5,780,650 - AO353_26320 0.85 +0.3
5,780,650 - AO353_26320 0.85 +1.1
5,780,650 - AO353_26320 0.85 -0.2
5,780,699 + +0.4
5,780,765 + -1.6
5,780,765 + +1.0
5,780,906 + AO353_26325 0.15 -1.2
5,780,906 + AO353_26325 0.15 -0.2
5,780,907 - AO353_26325 0.15 +3.0
5,780,907 - AO353_26325 0.15 -0.1
5,780,907 - AO353_26325 0.15 -1.2
5,781,080 + AO353_26325 0.33 +1.2
5,781,104 + AO353_26325 0.35 +0.7
5,781,104 + AO353_26325 0.35 -0.1
5,781,104 + AO353_26325 0.35 -1.7
5,781,104 + AO353_26325 0.35 +1.1
5,781,105 - AO353_26325 0.35 +1.7
5,781,105 - AO353_26325 0.35 +1.7
5,781,105 - AO353_26325 0.35 +1.8
5,781,105 - AO353_26325 0.35 -1.6
5,781,251 - AO353_26325 0.50 +0.8
5,781,251 - AO353_26325 0.50 +0.1
5,781,288 + AO353_26325 0.54 +0.3
5,781,361 - AO353_26325 0.61 +1.0
5,781,369 + AO353_26325 0.62 -0.8
5,781,370 - AO353_26325 0.62 +0.4
5,781,370 - AO353_26325 0.62 -0.7
5,781,413 + AO353_26325 0.67 +0.4
5,781,435 + AO353_26325 0.69 -0.2
5,781,436 - AO353_26325 0.69 -1.2
5,781,436 - AO353_26325 0.69 +0.0
5,781,489 + AO353_26325 0.74 +0.3
5,781,489 + AO353_26325 0.74 +0.9
5,781,490 - AO353_26325 0.74 +0.2
5,781,608 + -0.6
5,781,608 + AO353_26325 0.86 -0.1
5,781,608 + AO353_26325 0.86 -1.4
5,781,608 + AO353_26325 0.86 +0.2
5,781,608 + AO353_26325 0.86 +0.0
5,781,608 + AO353_26325 0.86 -1.4
5,781,608 + AO353_26325 0.86 +1.5
5,781,608 + AO353_26325 0.86 -0.1
5,781,609 - AO353_26325 0.86 -1.1
5,781,656 + +0.8
5,781,657 - -1.0
5,781,734 + -0.7
5,781,734 + -1.0
5,781,734 + -0.8
5,781,735 - +0.4
5,781,735 - +1.2
5,781,735 - -0.9
5,781,735 - -2.4
5,781,735 - -2.7
5,781,735 - +0.2
5,781,735 - -0.2
5,781,735 - -0.5
5,781,735 - +0.4
5,781,735 - -1.2
5,781,789 + -1.2
5,781,789 + +0.7
5,781,790 - +0.0
5,781,844 - AO353_26330 0.13 +0.1
5,781,922 - AO353_26330 0.22 +2.4
5,781,922 - AO353_26330 0.22 -0.7
5,782,199 + AO353_26330 0.57 +0.4
5,782,199 + AO353_26330 0.57 -1.9
5,782,273 + AO353_26330 0.66 -0.2
5,782,276 - AO353_26330 0.66 +0.7
5,782,317 + AO353_26330 0.71 -0.7
5,782,317 + +1.4
5,782,317 + AO353_26330 0.71 -0.2
5,782,318 - AO353_26330 0.71 -0.2
5,782,318 - AO353_26330 0.71 -2.7
5,782,318 - AO353_26330 0.71 -0.6
5,782,318 - AO353_26330 0.71 -0.6
5,782,318 - AO353_26330 0.71 +1.0
5,782,318 - AO353_26330 0.71 +0.6
5,782,318 - AO353_26330 0.71 -0.8
5,782,350 + AO353_26330 0.75 +0.9
5,782,351 - AO353_26330 0.75 +0.4
5,782,351 - AO353_26330 0.75 -1.9
5,782,351 - AO353_26330 0.75 -0.3
5,782,370 + AO353_26330 0.78 +0.7
5,782,370 + AO353_26330 0.78 +0.3
5,782,371 - AO353_26330 0.78 -0.2
5,782,376 + AO353_26330 0.78 -0.3
5,782,376 + AO353_26330 0.78 -1.7
5,782,376 + AO353_26330 0.78 +0.8
5,782,376 + AO353_26330 0.78 +1.6
5,782,376 + AO353_26330 0.78 +0.4
5,782,376 + AO353_26330 0.78 +0.0
5,782,376 + AO353_26330 0.78 +0.4
5,782,376 + AO353_26330 0.78 +0.1
5,782,377 - AO353_26330 0.79 +0.4
5,782,377 - AO353_26330 0.79 -0.9
5,782,377 - AO353_26330 0.79 +0.2
5,782,377 - AO353_26330 0.79 +0.8
5,782,377 - AO353_26330 0.79 -0.5
5,782,377 - AO353_26330 0.79 -1.2
5,782,408 + AO353_26330 0.82 +0.1
5,782,493 - -1.0
5,782,549 + +1.4
5,782,549 + -1.9
5,782,549 + -2.3
5,782,550 - -0.7
5,782,550 - -1.4
5,782,563 + -0.9
5,782,564 - -2.2
5,782,564 - +0.1
5,782,683 + +0.9
5,782,683 + -0.2
5,782,683 + -0.4
5,782,712 + +0.6
5,782,712 + +0.9
5,782,712 + -0.9

Or see this region's nucleotide sequence