Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26055

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26045 and AO353_26050 are separated by 180 nucleotidesAO353_26050 and AO353_26055 are separated by 159 nucleotidesAO353_26055 and AO353_26060 are separated by 108 nucleotides AO353_26045: AO353_26045 - hypothetical protein, at 5,735,836 to 5,736,165 _26045 AO353_26050: AO353_26050 - hypothetical protein, at 5,736,346 to 5,736,705 _26050 AO353_26055: AO353_26055 - hypothetical protein, at 5,736,865 to 5,737,071 _26055 AO353_26060: AO353_26060 - integrase, at 5,737,180 to 5,738,013 _26060 Position (kb) 5736 5737 5738Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5735.894 kb on + strand, within AO353_26045at 5735.918 kb on + strand, within AO353_26045at 5735.918 kb on + strandat 5736.059 kb on + strand, within AO353_26045at 5736.060 kb on - strand, within AO353_26045at 5736.060 kb on - strand, within AO353_26045at 5736.060 kb on - strand, within AO353_26045at 5736.139 kb on + strandat 5736.144 kb on - strandat 5736.237 kb on + strandat 5736.348 kb on - strandat 5736.348 kb on - strandat 5736.415 kb on - strand, within AO353_26050at 5736.441 kb on - strand, within AO353_26050at 5736.443 kb on - strand, within AO353_26050at 5736.514 kb on + strand, within AO353_26050at 5736.594 kb on + strand, within AO353_26050at 5736.622 kb on - strandat 5736.674 kb on - strandat 5736.771 kb on + strandat 5736.771 kb on + strandat 5736.771 kb on + strandat 5736.771 kb on + strandat 5736.772 kb on - strandat 5736.772 kb on - strandat 5736.772 kb on - strandat 5736.818 kb on + strandat 5736.819 kb on - strandat 5736.823 kb on + strandat 5736.866 kb on + strandat 5736.886 kb on + strand, within AO353_26055at 5736.907 kb on - strand, within AO353_26055at 5736.913 kb on + strand, within AO353_26055at 5736.925 kb on - strand, within AO353_26055at 5736.940 kb on + strand, within AO353_26055at 5737.082 kb on + strandat 5737.108 kb on - strandat 5737.127 kb on + strandat 5737.127 kb on + strandat 5737.127 kb on + strandat 5737.127 kb on + strandat 5737.128 kb on - strandat 5737.128 kb on - strandat 5737.128 kb on - strandat 5737.128 kb on - strandat 5737.233 kb on - strandat 5737.233 kb on - strandat 5737.237 kb on + strandat 5737.237 kb on + strandat 5737.238 kb on - strandat 5737.238 kb on - strandat 5737.259 kb on - strandat 5737.259 kb on - strandat 5737.270 kb on + strand, within AO353_26060at 5737.271 kb on - strand, within AO353_26060at 5737.293 kb on + strand, within AO353_26060at 5737.334 kb on + strand, within AO353_26060at 5737.334 kb on + strand, within AO353_26060at 5737.335 kb on - strand, within AO353_26060at 5737.355 kb on + strand, within AO353_26060at 5737.355 kb on + strand, within AO353_26060at 5737.355 kb on + strand, within AO353_26060at 5737.355 kb on + strand, within AO353_26060at 5737.356 kb on - strand, within AO353_26060at 5737.383 kb on + strand, within AO353_26060at 5737.383 kb on + strand, within AO353_26060at 5737.384 kb on - strand, within AO353_26060at 5737.506 kb on - strand, within AO353_26060at 5737.517 kb on + strand, within AO353_26060at 5737.517 kb on + strand, within AO353_26060at 5737.517 kb on + strand, within AO353_26060at 5737.517 kb on + strand, within AO353_26060at 5737.518 kb on - strand, within AO353_26060at 5737.518 kb on - strand, within AO353_26060at 5737.518 kb on - strand, within AO353_26060at 5737.518 kb on - strand, within AO353_26060at 5737.518 kb on - strand, within AO353_26060at 5737.518 kb on - strand, within AO353_26060at 5737.519 kb on + strand, within AO353_26060at 5737.549 kb on + strand, within AO353_26060at 5737.549 kb on + strand, within AO353_26060at 5737.549 kb on + strand, within AO353_26060at 5737.549 kb on + strand, within AO353_26060at 5737.550 kb on - strand, within AO353_26060at 5737.550 kb on - strand, within AO353_26060at 5737.550 kb on - strand, within AO353_26060at 5737.610 kb on + strand, within AO353_26060at 5737.689 kb on + strand, within AO353_26060at 5737.690 kb on - strand, within AO353_26060at 5737.712 kb on - strand, within AO353_26060at 5737.741 kb on + strand, within AO353_26060at 5737.741 kb on + strand, within AO353_26060at 5737.742 kb on - strand, within AO353_26060at 5737.837 kb on + strand, within AO353_26060at 5737.837 kb on + strand, within AO353_26060at 5737.837 kb on + strand, within AO353_26060at 5737.837 kb on + strand, within AO353_26060at 5737.837 kb on + strand, within AO353_26060at 5737.837 kb on + strand, within AO353_26060at 5737.838 kb on - strand, within AO353_26060at 5737.847 kb on + strand, within AO353_26060at 5737.881 kb on - strand, within AO353_26060at 5737.881 kb on - strand, within AO353_26060at 5737.881 kb on - strand, within AO353_26060at 5737.924 kb on + strand, within AO353_26060at 5737.925 kb on - strand, within AO353_26060at 5738.030 kb on - strandat 5738.039 kb on - strandat 5738.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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5,735,894 + AO353_26045 0.18 -0.9
5,735,918 + AO353_26045 0.25 +1.1
5,735,918 + +0.4
5,736,059 + AO353_26045 0.68 +0.9
5,736,060 - AO353_26045 0.68 -0.0
5,736,060 - AO353_26045 0.68 -1.9
5,736,060 - AO353_26045 0.68 -1.0
5,736,139 + +0.3
5,736,144 - -1.8
5,736,237 + -0.4
5,736,348 - -0.9
5,736,348 - +1.4
5,736,415 - AO353_26050 0.19 +2.1
5,736,441 - AO353_26050 0.26 -0.5
5,736,443 - AO353_26050 0.27 +0.7
5,736,514 + AO353_26050 0.47 -0.2
5,736,594 + AO353_26050 0.69 -0.5
5,736,622 - -0.9
5,736,674 - -0.6
5,736,771 + +1.0
5,736,771 + +0.2
5,736,771 + -0.4
5,736,771 + +1.8
5,736,772 - +0.6
5,736,772 - -1.3
5,736,772 - +0.5
5,736,818 + +1.1
5,736,819 - +0.5
5,736,823 + +0.8
5,736,866 + +0.6
5,736,886 + AO353_26055 0.10 -1.2
5,736,907 - AO353_26055 0.20 -0.6
5,736,913 + AO353_26055 0.23 -1.4
5,736,925 - AO353_26055 0.29 -0.2
5,736,940 + AO353_26055 0.36 -1.5
5,737,082 + +0.2
5,737,108 - +0.2
5,737,127 + +0.4
5,737,127 + -0.0
5,737,127 + +0.1
5,737,127 + +0.4
5,737,128 - +0.4
5,737,128 - -0.5
5,737,128 - -1.4
5,737,128 - -0.2
5,737,233 - +0.6
5,737,233 - -0.3
5,737,237 + -1.8
5,737,237 + -1.8
5,737,238 - +0.2
5,737,238 - -0.2
5,737,259 - +0.7
5,737,259 - +1.4
5,737,270 + AO353_26060 0.11 +0.6
5,737,271 - AO353_26060 0.11 +0.2
5,737,293 + AO353_26060 0.14 -0.9
5,737,334 + AO353_26060 0.18 -1.8
5,737,334 + AO353_26060 0.18 -0.4
5,737,335 - AO353_26060 0.19 -0.2
5,737,355 + AO353_26060 0.21 +1.0
5,737,355 + AO353_26060 0.21 -0.1
5,737,355 + AO353_26060 0.21 -0.2
5,737,355 + AO353_26060 0.21 -0.4
5,737,356 - AO353_26060 0.21 -1.9
5,737,383 + AO353_26060 0.24 -2.0
5,737,383 + AO353_26060 0.24 -1.0
5,737,384 - AO353_26060 0.24 -0.6
5,737,506 - AO353_26060 0.39 -1.8
5,737,517 + AO353_26060 0.40 -1.2
5,737,517 + AO353_26060 0.40 -0.9
5,737,517 + AO353_26060 0.40 +0.4
5,737,517 + AO353_26060 0.40 +0.4
5,737,518 - AO353_26060 0.41 +0.3
5,737,518 - AO353_26060 0.41 +0.4
5,737,518 - AO353_26060 0.41 -0.5
5,737,518 - AO353_26060 0.41 +0.5
5,737,518 - AO353_26060 0.41 +0.4
5,737,518 - AO353_26060 0.41 +0.1
5,737,519 + AO353_26060 0.41 -0.2
5,737,549 + AO353_26060 0.44 -0.6
5,737,549 + AO353_26060 0.44 -3.0
5,737,549 + AO353_26060 0.44 +1.1
5,737,549 + AO353_26060 0.44 -0.6
5,737,550 - AO353_26060 0.44 +0.7
5,737,550 - AO353_26060 0.44 +0.8
5,737,550 - AO353_26060 0.44 +0.4
5,737,610 + AO353_26060 0.52 +0.7
5,737,689 + AO353_26060 0.61 -0.4
5,737,690 - AO353_26060 0.61 -0.9
5,737,712 - AO353_26060 0.64 +0.1
5,737,741 + AO353_26060 0.67 +0.1
5,737,741 + AO353_26060 0.67 -2.0
5,737,742 - AO353_26060 0.67 +0.7
5,737,837 + AO353_26060 0.79 +0.4
5,737,837 + AO353_26060 0.79 +0.4
5,737,837 + AO353_26060 0.79 -0.2
5,737,837 + AO353_26060 0.79 +1.3
5,737,837 + AO353_26060 0.79 +0.8
5,737,837 + AO353_26060 0.79 +0.9
5,737,838 - AO353_26060 0.79 +0.5
5,737,847 + AO353_26060 0.80 +0.3
5,737,881 - AO353_26060 0.84 +1.4
5,737,881 - AO353_26060 0.84 +0.8
5,737,881 - AO353_26060 0.84 -1.0
5,737,924 + AO353_26060 0.89 -0.9
5,737,925 - AO353_26060 0.89 -0.1
5,738,030 - +1.0
5,738,039 - -2.2
5,738,039 - +0.1

Or see this region's nucleotide sequence