Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25975

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25970 and AO353_25975 are separated by 102 nucleotidesAO353_25975 and AO353_25980 are separated by 92 nucleotidesAO353_25980 and AO353_25985 overlap by 7 nucleotides AO353_25970: AO353_25970 - asparaginase, at 5,723,224 to 5,724,264 _25970 AO353_25975: AO353_25975 - carboxylate--amine ligase, at 5,724,367 to 5,725,953 _25975 AO353_25980: AO353_25980 - ribosomal-protein-alanine acetyltransferase, at 5,726,046 to 5,726,549 _25980 AO353_25985: AO353_25985 - hypothetical protein, at 5,726,543 to 5,726,920 _25985 Position (kb) 5724 5725 5726Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5723.368 kb on + strand, within AO353_25970at 5723.368 kb on + strand, within AO353_25970at 5723.369 kb on - strand, within AO353_25970at 5723.375 kb on + strand, within AO353_25970at 5723.375 kb on + strand, within AO353_25970at 5723.376 kb on - strand, within AO353_25970at 5723.446 kb on + strand, within AO353_25970at 5723.446 kb on + strand, within AO353_25970at 5723.446 kb on + strand, within AO353_25970at 5723.446 kb on + strand, within AO353_25970at 5723.448 kb on + strand, within AO353_25970at 5723.459 kb on + strand, within AO353_25970at 5723.459 kb on + strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.520 kb on + strand, within AO353_25970at 5723.521 kb on - strand, within AO353_25970at 5723.521 kb on - strandat 5723.555 kb on + strandat 5723.555 kb on + strand, within AO353_25970at 5723.555 kb on + strand, within AO353_25970at 5723.555 kb on + strand, within AO353_25970at 5723.556 kb on - strand, within AO353_25970at 5723.556 kb on - strand, within AO353_25970at 5723.638 kb on + strand, within AO353_25970at 5723.639 kb on - strand, within AO353_25970at 5723.639 kb on - strand, within AO353_25970at 5723.795 kb on + strand, within AO353_25970at 5723.850 kb on + strand, within AO353_25970at 5723.850 kb on + strandat 5724.001 kb on - strand, within AO353_25970at 5724.018 kb on + strand, within AO353_25970at 5724.019 kb on - strand, within AO353_25970at 5724.019 kb on - strand, within AO353_25970at 5724.019 kb on - strand, within AO353_25970at 5724.219 kb on + strandat 5724.219 kb on + strandat 5724.219 kb on + strandat 5724.220 kb on - strandat 5724.220 kb on - strandat 5724.220 kb on - strandat 5724.223 kb on - strandat 5724.231 kb on - strandat 5724.314 kb on + strandat 5724.315 kb on - strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.330 kb on - strandat 5724.330 kb on - strandat 5724.330 kb on - strandat 5724.339 kb on + strandat 5724.422 kb on - strandat 5724.431 kb on + strandat 5724.431 kb on + strandat 5724.431 kb on + strandat 5724.431 kb on + strandat 5724.431 kb on + strandat 5724.432 kb on - strandat 5724.432 kb on - strandat 5724.449 kb on + strandat 5724.449 kb on + strandat 5724.450 kb on - strandat 5724.450 kb on - strandat 5724.450 kb on - strandat 5724.450 kb on - strandat 5724.540 kb on - strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.663 kb on - strand, within AO353_25975at 5724.663 kb on - strand, within AO353_25975at 5724.663 kb on - strand, within AO353_25975at 5724.663 kb on - strand, within AO353_25975at 5724.693 kb on - strand, within AO353_25975at 5724.693 kb on - strand, within AO353_25975at 5724.693 kb on - strand, within AO353_25975at 5724.693 kb on - strand, within AO353_25975at 5724.743 kb on + strand, within AO353_25975at 5724.744 kb on - strand, within AO353_25975at 5724.744 kb on - strand, within AO353_25975at 5724.744 kb on - strand, within AO353_25975at 5724.752 kb on + strand, within AO353_25975at 5724.752 kb on + strand, within AO353_25975at 5724.935 kb on + strand, within AO353_25975at 5724.935 kb on + strand, within AO353_25975at 5724.935 kb on + strand, within AO353_25975at 5724.936 kb on - strand, within AO353_25975at 5724.992 kb on + strand, within AO353_25975at 5724.992 kb on + strand, within AO353_25975at 5724.993 kb on - strand, within AO353_25975at 5725.005 kb on + strand, within AO353_25975at 5725.006 kb on - strand, within AO353_25975at 5725.077 kb on - strand, within AO353_25975at 5725.080 kb on + strand, within AO353_25975at 5725.080 kb on + strandat 5725.080 kb on + strand, within AO353_25975at 5725.080 kb on + strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.124 kb on + strand, within AO353_25975at 5725.124 kb on + strand, within AO353_25975at 5725.125 kb on - strand, within AO353_25975at 5725.142 kb on + strand, within AO353_25975at 5725.142 kb on + strand, within AO353_25975at 5725.143 kb on - strand, within AO353_25975at 5725.365 kb on + strand, within AO353_25975at 5725.366 kb on - strand, within AO353_25975at 5725.366 kb on - strand, within AO353_25975at 5725.366 kb on - strand, within AO353_25975at 5725.366 kb on - strand, within AO353_25975at 5725.384 kb on + strand, within AO353_25975at 5725.506 kb on - strand, within AO353_25975at 5725.518 kb on + strand, within AO353_25975at 5725.598 kb on + strand, within AO353_25975at 5725.599 kb on - strand, within AO353_25975at 5725.599 kb on - strand, within AO353_25975at 5725.682 kb on + strand, within AO353_25975at 5725.682 kb on + strand, within AO353_25975at 5725.683 kb on - strand, within AO353_25975at 5725.683 kb on - strand, within AO353_25975at 5725.685 kb on + strand, within AO353_25975at 5725.686 kb on - strand, within AO353_25975at 5725.686 kb on - strand, within AO353_25975at 5725.686 kb on - strand, within AO353_25975at 5725.700 kb on + strand, within AO353_25975at 5725.701 kb on - strand, within AO353_25975at 5725.701 kb on - strand, within AO353_25975at 5725.706 kb on + strand, within AO353_25975at 5725.706 kb on + strand, within AO353_25975at 5725.706 kb on + strand, within AO353_25975at 5725.707 kb on - strand, within AO353_25975at 5725.707 kb on - strand, within AO353_25975at 5725.726 kb on + strand, within AO353_25975at 5725.772 kb on + strand, within AO353_25975at 5725.773 kb on - strand, within AO353_25975at 5725.809 kb on - strandat 5725.809 kb on - strandat 5725.880 kb on + strandat 5725.880 kb on + strandat 5725.881 kb on - strandat 5725.990 kb on + strandat 5725.991 kb on - strandat 5726.034 kb on + strandat 5726.045 kb on + strandat 5726.046 kb on - strandat 5726.046 kb on - strandat 5726.133 kb on - strand, within AO353_25980at 5726.403 kb on + strandat 5726.404 kb on - strand, within AO353_25980at 5726.404 kb on - strand, within AO353_25980at 5726.404 kb on - strand, within AO353_25980at 5726.411 kb on + strand, within AO353_25980at 5726.411 kb on + strand, within AO353_25980at 5726.445 kb on + strand, within AO353_25980at 5726.445 kb on + strand, within AO353_25980at 5726.448 kb on + strand, within AO353_25980at 5726.448 kb on + strand, within AO353_25980at 5726.448 kb on + strand, within AO353_25980at 5726.448 kb on + strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.547 kb on + strandat 5726.547 kb on + strandat 5726.548 kb on - strandat 5726.590 kb on + strand, within AO353_25985at 5726.591 kb on - strand, within AO353_25985at 5726.592 kb on + strand, within AO353_25985at 5726.593 kb on - strand, within AO353_25985at 5726.593 kb on - strand, within AO353_25985at 5726.593 kb on - strand, within AO353_25985at 5726.766 kb on + strand, within AO353_25985at 5726.766 kb on + strand, within AO353_25985at 5726.767 kb on - strand, within AO353_25985at 5726.767 kb on - strand, within AO353_25985at 5726.937 kb on + strandat 5726.937 kb on + strandat 5726.937 kb on + strandat 5726.937 kb on + strandat 5726.937 kb on + strandat 5726.938 kb on - strandat 5726.947 kb on + strandat 5726.947 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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5,723,368 + AO353_25970 0.14 -0.8
5,723,368 + AO353_25970 0.14 +0.0
5,723,369 - AO353_25970 0.14 -0.2
5,723,375 + AO353_25970 0.15 -1.6
5,723,375 + AO353_25970 0.15 +0.2
5,723,376 - AO353_25970 0.15 +0.4
5,723,446 + AO353_25970 0.21 -0.0
5,723,446 + AO353_25970 0.21 -0.8
5,723,446 + AO353_25970 0.21 +0.1
5,723,446 + AO353_25970 0.21 -1.3
5,723,448 + AO353_25970 0.22 +1.1
5,723,459 + AO353_25970 0.23 -0.3
5,723,459 + AO353_25970 0.23 -0.8
5,723,460 - AO353_25970 0.23 -0.2
5,723,460 - AO353_25970 0.23 +0.3
5,723,460 - AO353_25970 0.23 -0.4
5,723,460 - AO353_25970 0.23 +0.1
5,723,460 - AO353_25970 0.23 +0.9
5,723,520 + AO353_25970 0.28 -0.9
5,723,521 - AO353_25970 0.29 -0.7
5,723,521 - +0.2
5,723,555 + -0.6
5,723,555 + AO353_25970 0.32 +1.0
5,723,555 + AO353_25970 0.32 -0.4
5,723,555 + AO353_25970 0.32 -0.4
5,723,556 - AO353_25970 0.32 +1.1
5,723,556 - AO353_25970 0.32 +0.5
5,723,638 + AO353_25970 0.40 +0.4
5,723,639 - AO353_25970 0.40 -1.3
5,723,639 - AO353_25970 0.40 -0.9
5,723,795 + AO353_25970 0.55 +0.7
5,723,850 + AO353_25970 0.60 -0.4
5,723,850 + +0.4
5,724,001 - AO353_25970 0.75 +1.2
5,724,018 + AO353_25970 0.76 +1.1
5,724,019 - AO353_25970 0.76 +0.8
5,724,019 - AO353_25970 0.76 -1.5
5,724,019 - AO353_25970 0.76 -0.1
5,724,219 + -0.2
5,724,219 + -0.2
5,724,219 + +0.4
5,724,220 - -1.2
5,724,220 - -2.2
5,724,220 - +0.4
5,724,223 - +1.0
5,724,231 - -2.8
5,724,314 + -0.4
5,724,315 - +0.4
5,724,329 + +0.4
5,724,329 + -0.1
5,724,329 + +2.4
5,724,329 + +1.0
5,724,329 + -0.6
5,724,329 + -0.3
5,724,330 - +0.2
5,724,330 - +0.8
5,724,330 - -0.2
5,724,339 + +0.7
5,724,422 - +0.1
5,724,431 + -1.9
5,724,431 + -0.3
5,724,431 + +0.4
5,724,431 + -0.1
5,724,431 + +0.3
5,724,432 - +0.5
5,724,432 - +0.9
5,724,449 + +0.1
5,724,449 + -0.6
5,724,450 - +1.1
5,724,450 - +2.1
5,724,450 - -1.3
5,724,450 - -1.4
5,724,540 - AO353_25975 0.11 +0.2
5,724,662 + AO353_25975 0.19 +0.0
5,724,662 + AO353_25975 0.19 +0.7
5,724,662 + AO353_25975 0.19 -0.4
5,724,662 + AO353_25975 0.19 +1.2
5,724,662 + AO353_25975 0.19 -2.6
5,724,662 + AO353_25975 0.19 -1.6
5,724,662 + AO353_25975 0.19 -1.8
5,724,663 - AO353_25975 0.19 -0.2
5,724,663 - AO353_25975 0.19 -0.6
5,724,663 - AO353_25975 0.19 -1.2
5,724,663 - AO353_25975 0.19 -0.4
5,724,693 - AO353_25975 0.21 -1.4
5,724,693 - AO353_25975 0.21 -0.9
5,724,693 - AO353_25975 0.21 -2.3
5,724,693 - AO353_25975 0.21 -0.2
5,724,743 + AO353_25975 0.24 -1.5
5,724,744 - AO353_25975 0.24 -0.7
5,724,744 - AO353_25975 0.24 +1.1
5,724,744 - AO353_25975 0.24 +0.3
5,724,752 + AO353_25975 0.24 -0.8
5,724,752 + AO353_25975 0.24 +0.1
5,724,935 + AO353_25975 0.36 -1.0
5,724,935 + AO353_25975 0.36 +0.4
5,724,935 + AO353_25975 0.36 -0.4
5,724,936 - AO353_25975 0.36 -1.9
5,724,992 + AO353_25975 0.39 -0.0
5,724,992 + AO353_25975 0.39 -1.0
5,724,993 - AO353_25975 0.39 -1.3
5,725,005 + AO353_25975 0.40 -0.0
5,725,006 - AO353_25975 0.40 -0.9
5,725,077 - AO353_25975 0.45 -1.0
5,725,080 + AO353_25975 0.45 -0.1
5,725,080 + +0.8
5,725,080 + AO353_25975 0.45 -0.3
5,725,080 + AO353_25975 0.45 +0.2
5,725,081 - AO353_25975 0.45 -1.8
5,725,081 - AO353_25975 0.45 +0.3
5,725,081 - AO353_25975 0.45 +0.6
5,725,081 - AO353_25975 0.45 -1.1
5,725,081 - AO353_25975 0.45 -2.2
5,725,081 - AO353_25975 0.45 -1.8
5,725,081 - AO353_25975 0.45 +0.6
5,725,124 + AO353_25975 0.48 -3.0
5,725,124 + AO353_25975 0.48 +1.2
5,725,125 - AO353_25975 0.48 +0.6
5,725,142 + AO353_25975 0.49 -2.1
5,725,142 + AO353_25975 0.49 -1.5
5,725,143 - AO353_25975 0.49 +0.9
5,725,365 + AO353_25975 0.63 -1.3
5,725,366 - AO353_25975 0.63 +0.2
5,725,366 - AO353_25975 0.63 -0.6
5,725,366 - AO353_25975 0.63 +0.1
5,725,366 - AO353_25975 0.63 +0.1
5,725,384 + AO353_25975 0.64 -0.4
5,725,506 - AO353_25975 0.72 +0.2
5,725,518 + AO353_25975 0.73 +0.5
5,725,598 + AO353_25975 0.78 +0.4
5,725,599 - AO353_25975 0.78 -0.7
5,725,599 - AO353_25975 0.78 +0.7
5,725,682 + AO353_25975 0.83 -0.0
5,725,682 + AO353_25975 0.83 -1.4
5,725,683 - AO353_25975 0.83 -0.3
5,725,683 - AO353_25975 0.83 -0.4
5,725,685 + AO353_25975 0.83 -0.0
5,725,686 - AO353_25975 0.83 -0.6
5,725,686 - AO353_25975 0.83 -0.7
5,725,686 - AO353_25975 0.83 +0.8
5,725,700 + AO353_25975 0.84 -0.4
5,725,701 - AO353_25975 0.84 -1.3
5,725,701 - AO353_25975 0.84 +0.4
5,725,706 + AO353_25975 0.84 +0.7
5,725,706 + AO353_25975 0.84 +0.1
5,725,706 + AO353_25975 0.84 +1.7
5,725,707 - AO353_25975 0.84 -1.3
5,725,707 - AO353_25975 0.84 -0.3
5,725,726 + AO353_25975 0.86 +1.7
5,725,772 + AO353_25975 0.89 +1.2
5,725,773 - AO353_25975 0.89 +0.2
5,725,809 - -0.6
5,725,809 - +1.0
5,725,880 + -1.6
5,725,880 + +0.4
5,725,881 - +1.4
5,725,990 + +0.1
5,725,991 - -0.4
5,726,034 + -1.9
5,726,045 + +1.4
5,726,046 - -0.2
5,726,046 - -0.6
5,726,133 - AO353_25980 0.17 -1.8
5,726,403 + -0.2
5,726,404 - AO353_25980 0.71 +0.3
5,726,404 - AO353_25980 0.71 -0.9
5,726,404 - AO353_25980 0.71 +1.4
5,726,411 + AO353_25980 0.72 -1.3
5,726,411 + AO353_25980 0.72 +0.3
5,726,445 + AO353_25980 0.79 +1.1
5,726,445 + AO353_25980 0.79 -1.2
5,726,448 + AO353_25980 0.80 -0.9
5,726,448 + AO353_25980 0.80 -1.4
5,726,448 + AO353_25980 0.80 -1.4
5,726,448 + AO353_25980 0.80 -0.6
5,726,449 - AO353_25980 0.80 -1.2
5,726,449 - AO353_25980 0.80 +0.4
5,726,449 - AO353_25980 0.80 -2.0
5,726,449 - AO353_25980 0.80 -1.2
5,726,449 - AO353_25980 0.80 -1.0
5,726,547 + +1.0
5,726,547 + +1.1
5,726,548 - +0.7
5,726,590 + AO353_25985 0.12 -0.5
5,726,591 - AO353_25985 0.13 +0.0
5,726,592 + AO353_25985 0.13 +0.4
5,726,593 - AO353_25985 0.13 +0.4
5,726,593 - AO353_25985 0.13 +0.2
5,726,593 - AO353_25985 0.13 -0.5
5,726,766 + AO353_25985 0.59 -1.2
5,726,766 + AO353_25985 0.59 -1.0
5,726,767 - AO353_25985 0.59 +0.3
5,726,767 - AO353_25985 0.59 -0.9
5,726,937 + +0.4
5,726,937 + -0.5
5,726,937 + -0.9
5,726,937 + -0.4
5,726,937 + +0.3
5,726,938 - +0.2
5,726,947 + +1.4
5,726,947 + +1.4

Or see this region's nucleotide sequence