Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25640 and AO353_25645 are separated by 12 nucleotides AO353_25645 and AO353_25650 are separated by 76 nucleotides AO353_25650 and AO353_25655 overlap by 4 nucleotides AO353_25655 and AO353_25660 are separated by 39 nucleotides
AO353_25640: AO353_25640 - AsnC family transcriptional regulator, at 5,655,643 to 5,656,119
_25640
AO353_25645: AO353_25645 - amino acid transporter, at 5,656,132 to 5,656,893
_25645
AO353_25650: AO353_25650 - amino acid ABC transporter permease, at 5,656,970 to 5,657,680
_25650
AO353_25655: AO353_25655 - amino acid ABC transporter permease, at 5,657,677 to 5,658,438
_25655
AO353_25660: AO353_25660 - ABC transporter substrate-binding protein, at 5,658,478 to 5,659,257
_25660
Position (kb) 5656
5657
5658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5656.031 kb on + strand, within AO353_25640 at 5656.031 kb on + strand, within AO353_25640 at 5656.031 kb on + strand, within AO353_25640 at 5656.081 kb on - strand at 5656.101 kb on + strand at 5656.121 kb on + strand at 5656.121 kb on + strand at 5656.122 kb on - strand at 5656.122 kb on - strand at 5656.122 kb on - strand at 5656.122 kb on - strand at 5656.122 kb on - strand at 5656.122 kb on - strand at 5656.122 kb on - strand at 5656.162 kb on + strand at 5656.330 kb on + strand, within AO353_25645 at 5656.330 kb on + strand, within AO353_25645 at 5656.330 kb on + strand, within AO353_25645 at 5656.330 kb on + strand, within AO353_25645 at 5656.330 kb on + strand, within AO353_25645 at 5656.331 kb on - strand, within AO353_25645 at 5656.331 kb on - strand, within AO353_25645 at 5656.331 kb on - strand, within AO353_25645 at 5656.500 kb on - strand, within AO353_25645 at 5656.750 kb on - strand, within AO353_25645 at 5656.750 kb on - strand, within AO353_25645 at 5656.750 kb on - strand, within AO353_25645 at 5656.761 kb on + strand, within AO353_25645 at 5656.761 kb on + strand, within AO353_25645 at 5656.761 kb on + strand, within AO353_25645 at 5656.761 kb on + strand, within AO353_25645 at 5656.762 kb on - strand, within AO353_25645 at 5656.762 kb on - strand, within AO353_25645 at 5656.762 kb on - strand, within AO353_25645 at 5656.762 kb on - strand, within AO353_25645 at 5656.762 kb on - strand, within AO353_25645 at 5656.762 kb on - strand, within AO353_25645 at 5656.840 kb on + strand at 5656.840 kb on + strand at 5656.840 kb on + strand at 5656.840 kb on + strand at 5656.840 kb on + strand at 5656.840 kb on + strand at 5656.840 kb on + strand at 5656.841 kb on - strand at 5656.841 kb on - strand at 5656.841 kb on - strand at 5656.841 kb on - strand at 5656.841 kb on - strand at 5656.863 kb on + strand at 5656.863 kb on + strand at 5656.864 kb on - strand at 5656.864 kb on - strand at 5656.864 kb on - strand at 5656.864 kb on - strand at 5656.865 kb on + strand at 5656.865 kb on + strand at 5656.865 kb on + strand at 5656.866 kb on - strand at 5656.890 kb on - strand at 5656.890 kb on - strand at 5656.890 kb on - strand at 5657.053 kb on - strand, within AO353_25650 at 5657.193 kb on + strand, within AO353_25650 at 5657.193 kb on + strand, within AO353_25650 at 5657.193 kb on + strand, within AO353_25650 at 5657.193 kb on + strand, within AO353_25650 at 5657.193 kb on + strand, within AO353_25650 at 5657.193 kb on + strand, within AO353_25650 at 5657.194 kb on - strand, within AO353_25650 at 5657.194 kb on - strand, within AO353_25650 at 5657.194 kb on - strand, within AO353_25650 at 5657.194 kb on - strand, within AO353_25650 at 5657.196 kb on + strand, within AO353_25650 at 5657.197 kb on - strand, within AO353_25650 at 5657.197 kb on - strand, within AO353_25650 at 5657.241 kb on + strand, within AO353_25650 at 5657.241 kb on + strand, within AO353_25650 at 5657.241 kb on + strand, within AO353_25650 at 5657.242 kb on - strand, within AO353_25650 at 5657.242 kb on - strand, within AO353_25650 at 5657.242 kb on - strand, within AO353_25650 at 5657.265 kb on + strand, within AO353_25650 at 5657.266 kb on - strand, within AO353_25650 at 5657.266 kb on - strand, within AO353_25650 at 5657.334 kb on + strand, within AO353_25650 at 5657.334 kb on + strand, within AO353_25650 at 5657.335 kb on - strand at 5657.335 kb on - strand, within AO353_25650 at 5657.434 kb on - strand, within AO353_25650 at 5657.466 kb on + strand, within AO353_25650 at 5657.466 kb on + strand, within AO353_25650 at 5657.466 kb on + strand, within AO353_25650 at 5657.466 kb on + strand, within AO353_25650 at 5657.466 kb on + strand at 5657.466 kb on + strand, within AO353_25650 at 5657.466 kb on + strand, within AO353_25650 at 5657.466 kb on + strand, within AO353_25650 at 5657.466 kb on + strand, within AO353_25650 at 5657.467 kb on - strand, within AO353_25650 at 5657.467 kb on - strand, within AO353_25650 at 5657.467 kb on - strand, within AO353_25650 at 5657.467 kb on - strand, within AO353_25650 at 5657.467 kb on - strand, within AO353_25650 at 5657.467 kb on - strand, within AO353_25650 at 5657.467 kb on - strand, within AO353_25650 at 5657.467 kb on - strand, within AO353_25650 at 5657.490 kb on + strand, within AO353_25650 at 5657.491 kb on - strand, within AO353_25650 at 5657.491 kb on - strand, within AO353_25650 at 5657.491 kb on - strand, within AO353_25650 at 5657.601 kb on - strand, within AO353_25650 at 5657.628 kb on + strand at 5657.628 kb on + strand at 5657.629 kb on - strand at 5657.709 kb on - strand at 5657.735 kb on + strand at 5657.735 kb on + strand at 5657.735 kb on + strand at 5657.735 kb on + strand at 5657.735 kb on + strand at 5657.735 kb on + strand at 5657.736 kb on - strand at 5657.736 kb on - strand at 5657.763 kb on - strand, within AO353_25655 at 5657.948 kb on + strand, within AO353_25655 at 5658.044 kb on + strand, within AO353_25655 at 5658.044 kb on + strand, within AO353_25655 at 5658.044 kb on + strand, within AO353_25655 at 5658.045 kb on - strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.053 kb on + strand, within AO353_25655 at 5658.054 kb on - strand, within AO353_25655 at 5658.054 kb on - strand, within AO353_25655 at 5658.054 kb on - strand, within AO353_25655 at 5658.054 kb on - strand, within AO353_25655 at 5658.054 kb on - strand, within AO353_25655 at 5658.057 kb on + strand, within AO353_25655 at 5658.057 kb on + strand, within AO353_25655 at 5658.057 kb on + strand, within AO353_25655 at 5658.057 kb on + strand, within AO353_25655 at 5658.058 kb on - strand, within AO353_25655 at 5658.058 kb on - strand, within AO353_25655 at 5658.058 kb on - strand, within AO353_25655 at 5658.104 kb on + strand, within AO353_25655 at 5658.104 kb on + strand, within AO353_25655 at 5658.104 kb on + strand, within AO353_25655 at 5658.105 kb on - strand, within AO353_25655 at 5658.105 kb on - strand, within AO353_25655 at 5658.105 kb on - strand, within AO353_25655 at 5658.105 kb on - strand, within AO353_25655 at 5658.155 kb on + strand, within AO353_25655 at 5658.155 kb on + strand, within AO353_25655 at 5658.155 kb on + strand, within AO353_25655 at 5658.156 kb on - strand, within AO353_25655 at 5658.209 kb on + strand, within AO353_25655 at 5658.210 kb on - strand, within AO353_25655 at 5658.210 kb on - strand, within AO353_25655 at 5658.210 kb on - strand at 5658.210 kb on - strand, within AO353_25655 at 5658.397 kb on - strand at 5658.488 kb on + strand at 5658.489 kb on - strand at 5658.489 kb on - strand at 5658.489 kb on - strand at 5658.509 kb on + strand at 5658.509 kb on + strand at 5658.509 kb on + strand at 5658.510 kb on - strand at 5658.510 kb on - strand at 5658.510 kb on - strand at 5658.510 kb on - strand at 5658.530 kb on + strand at 5658.530 kb on + strand at 5658.530 kb on + strand at 5658.531 kb on - strand at 5658.531 kb on - strand at 5658.531 kb on - strand at 5658.601 kb on + strand, within AO353_25660 at 5658.601 kb on + strand, within AO353_25660 at 5658.602 kb on - strand, within AO353_25660 at 5658.602 kb on - strand, within AO353_25660
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 5,656,031 + AO353_25640 0.81 +1.9 5,656,031 + AO353_25640 0.81 -1.2 5,656,031 + AO353_25640 0.81 +0.9 5,656,081 - +0.6 5,656,101 + +0.8 5,656,121 + -2.2 5,656,121 + -0.6 5,656,122 - +1.7 5,656,122 - -0.2 5,656,122 - +0.2 5,656,122 - +1.8 5,656,122 - -2.4 5,656,122 - +0.6 5,656,122 - +0.4 5,656,162 + -0.9 5,656,330 + AO353_25645 0.26 +1.1 5,656,330 + AO353_25645 0.26 +1.0 5,656,330 + AO353_25645 0.26 -2.1 5,656,330 + AO353_25645 0.26 -0.8 5,656,330 + AO353_25645 0.26 +0.4 5,656,331 - AO353_25645 0.26 -0.6 5,656,331 - AO353_25645 0.26 +0.7 5,656,331 - AO353_25645 0.26 -0.1 5,656,500 - AO353_25645 0.48 +0.1 5,656,750 - AO353_25645 0.81 -0.1 5,656,750 - AO353_25645 0.81 +1.5 5,656,750 - AO353_25645 0.81 -0.2 5,656,761 + AO353_25645 0.83 +0.8 5,656,761 + AO353_25645 0.83 +0.2 5,656,761 + AO353_25645 0.83 -1.4 5,656,761 + AO353_25645 0.83 -1.8 5,656,762 - AO353_25645 0.83 +0.7 5,656,762 - AO353_25645 0.83 +0.6 5,656,762 - AO353_25645 0.83 -0.7 5,656,762 - AO353_25645 0.83 -1.2 5,656,762 - AO353_25645 0.83 +0.6 5,656,762 - AO353_25645 0.83 +0.6 5,656,840 + +0.2 5,656,840 + -0.1 5,656,840 + -2.1 5,656,840 + +0.0 5,656,840 + -0.2 5,656,840 + -0.8 5,656,840 + -0.9 5,656,841 - -0.2 5,656,841 - -1.9 5,656,841 - +1.2 5,656,841 - -1.2 5,656,841 - -0.3 5,656,863 + +0.4 5,656,863 + +0.7 5,656,864 - -0.5 5,656,864 - +0.8 5,656,864 - -0.9 5,656,864 - -0.3 5,656,865 + +0.9 5,656,865 + -1.9 5,656,865 + -0.5 5,656,866 - -0.1 5,656,890 - -2.5 5,656,890 - -1.1 5,656,890 - -2.1 5,657,053 - AO353_25650 0.12 +0.9 5,657,193 + AO353_25650 0.31 -0.1 5,657,193 + AO353_25650 0.31 -0.1 5,657,193 + AO353_25650 0.31 -0.0 5,657,193 + AO353_25650 0.31 +1.8 5,657,193 + AO353_25650 0.31 -0.9 5,657,193 + AO353_25650 0.31 +0.4 5,657,194 - AO353_25650 0.32 +0.2 5,657,194 - AO353_25650 0.32 +0.3 5,657,194 - AO353_25650 0.32 -0.3 5,657,194 - AO353_25650 0.32 +0.2 5,657,196 + AO353_25650 0.32 +1.4 5,657,197 - AO353_25650 0.32 -0.7 5,657,197 - AO353_25650 0.32 +2.1 5,657,241 + AO353_25650 0.38 +1.2 5,657,241 + AO353_25650 0.38 +1.1 5,657,241 + AO353_25650 0.38 +1.4 5,657,242 - AO353_25650 0.38 +1.9 5,657,242 - AO353_25650 0.38 +0.7 5,657,242 - AO353_25650 0.38 +1.1 5,657,265 + AO353_25650 0.41 +0.9 5,657,266 - AO353_25650 0.42 -1.6 5,657,266 - AO353_25650 0.42 -1.6 5,657,334 + AO353_25650 0.51 +0.7 5,657,334 + AO353_25650 0.51 +1.2 5,657,335 - -0.2 5,657,335 - AO353_25650 0.51 +0.7 5,657,434 - AO353_25650 0.65 +0.7 5,657,466 + AO353_25650 0.70 +0.6 5,657,466 + AO353_25650 0.70 -0.8 5,657,466 + AO353_25650 0.70 +0.5 5,657,466 + AO353_25650 0.70 -1.9 5,657,466 + +0.8 5,657,466 + AO353_25650 0.70 +0.3 5,657,466 + AO353_25650 0.70 +1.4 5,657,466 + AO353_25650 0.70 +0.3 5,657,466 + AO353_25650 0.70 -1.3 5,657,467 - AO353_25650 0.70 -1.8 5,657,467 - AO353_25650 0.70 -0.4 5,657,467 - AO353_25650 0.70 -0.3 5,657,467 - AO353_25650 0.70 -2.1 5,657,467 - AO353_25650 0.70 -0.5 5,657,467 - AO353_25650 0.70 -0.2 5,657,467 - AO353_25650 0.70 -0.9 5,657,467 - AO353_25650 0.70 +0.1 5,657,490 + AO353_25650 0.73 -0.0 5,657,491 - AO353_25650 0.73 +0.0 5,657,491 - AO353_25650 0.73 +1.4 5,657,491 - AO353_25650 0.73 -0.0 5,657,601 - AO353_25650 0.89 -0.7 5,657,628 + -0.9 5,657,628 + -0.2 5,657,629 - +0.0 5,657,709 - +1.4 5,657,735 + +2.4 5,657,735 + +0.4 5,657,735 + +1.1 5,657,735 + -0.2 5,657,735 + -0.3 5,657,735 + +0.1 5,657,736 - -0.4 5,657,736 - -1.1 5,657,763 - AO353_25655 0.11 +0.4 5,657,948 + AO353_25655 0.36 +0.6 5,658,044 + AO353_25655 0.48 +0.6 5,658,044 + AO353_25655 0.48 -1.2 5,658,044 + AO353_25655 0.48 -0.6 5,658,045 - AO353_25655 0.48 +1.0 5,658,053 + AO353_25655 0.49 -0.2 5,658,053 + AO353_25655 0.49 -1.3 5,658,053 + AO353_25655 0.49 -0.2 5,658,053 + AO353_25655 0.49 -2.2 5,658,053 + AO353_25655 0.49 -0.2 5,658,053 + AO353_25655 0.49 -0.2 5,658,053 + AO353_25655 0.49 -1.4 5,658,053 + AO353_25655 0.49 +1.4 5,658,053 + AO353_25655 0.49 +1.4 5,658,053 + AO353_25655 0.49 +1.2 5,658,053 + AO353_25655 0.49 -0.6 5,658,054 - AO353_25655 0.49 -0.9 5,658,054 - AO353_25655 0.49 +0.0 5,658,054 - AO353_25655 0.49 -1.0 5,658,054 - AO353_25655 0.49 -0.4 5,658,054 - AO353_25655 0.49 +0.7 5,658,057 + AO353_25655 0.50 +0.4 5,658,057 + AO353_25655 0.50 +0.7 5,658,057 + AO353_25655 0.50 +0.4 5,658,057 + AO353_25655 0.50 +1.7 5,658,058 - AO353_25655 0.50 +0.1 5,658,058 - AO353_25655 0.50 -1.1 5,658,058 - AO353_25655 0.50 -1.4 5,658,104 + AO353_25655 0.56 +1.0 5,658,104 + AO353_25655 0.56 -1.1 5,658,104 + AO353_25655 0.56 -3.0 5,658,105 - AO353_25655 0.56 +0.2 5,658,105 - AO353_25655 0.56 +0.4 5,658,105 - AO353_25655 0.56 -0.2 5,658,105 - AO353_25655 0.56 +1.0 5,658,155 + AO353_25655 0.63 +0.7 5,658,155 + AO353_25655 0.63 -0.5 5,658,155 + AO353_25655 0.63 -0.0 5,658,156 - AO353_25655 0.63 +1.4 5,658,209 + AO353_25655 0.70 +1.3 5,658,210 - AO353_25655 0.70 -1.8 5,658,210 - AO353_25655 0.70 +0.4 5,658,210 - +0.4 5,658,210 - AO353_25655 0.70 +0.4 5,658,397 - +1.1 5,658,488 + +2.4 5,658,489 - -0.1 5,658,489 - +1.0 5,658,489 - +1.9 5,658,509 + +2.0 5,658,509 + -1.8 5,658,509 + +0.2 5,658,510 - +1.2 5,658,510 - -0.8 5,658,510 - +0.2 5,658,510 - +0.4 5,658,530 + +1.0 5,658,530 + +0.6 5,658,530 + -2.6 5,658,531 - -1.6 5,658,531 - -0.3 5,658,531 - -0.9 5,658,601 + AO353_25660 0.16 -0.8 5,658,601 + AO353_25660 0.16 -0.6 5,658,602 - AO353_25660 0.16 -0.6 5,658,602 - AO353_25660 0.16 -1.2
Or see this region's nucleotide sequence