Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25540 and AO353_25545 overlap by 1 nucleotides AO353_25545 and AO353_25550 overlap by 4 nucleotides AO353_25550 and AO353_25555 overlap by 4 nucleotides AO353_25555 and AO353_25560 overlap by 4 nucleotides AO353_25560 and AO353_25565 overlap by 4 nucleotides
AO353_25540: AO353_25540 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 5,633,610 to 5,635,601
_25540
AO353_25545: AO353_25545 - 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase, at 5,635,601 to 5,636,485
_25545
AO353_25550: AO353_25550 - 4-amino-4-deoxy-L-arabinose transferase, at 5,636,482 to 5,638,131
_25550
AO353_25555: AO353_25555 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 5,638,128 to 5,638,472
_25555
AO353_25560: AO353_25560 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 5,638,469 to 5,638,882
_25560
AO353_25565: AO353_25565 - UDP-glucose 6-dehydrogenase, at 5,638,879 to 5,640,252
_25565
Position (kb) 5636
5637
5638
5639 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5636.653 kb on + strand, within AO353_25550 at 5636.776 kb on + strand, within AO353_25550 at 5637.061 kb on + strand, within AO353_25550 at 5637.061 kb on + strand, within AO353_25550 at 5637.178 kb on + strand, within AO353_25550 at 5637.259 kb on + strand, within AO353_25550 at 5637.259 kb on + strand, within AO353_25550 at 5637.424 kb on + strand, within AO353_25550 at 5637.424 kb on + strand, within AO353_25550 at 5637.424 kb on + strand, within AO353_25550 at 5637.424 kb on + strand, within AO353_25550 at 5637.424 kb on + strand, within AO353_25550 at 5637.424 kb on + strand, within AO353_25550 at 5637.424 kb on + strand, within AO353_25550 at 5637.424 kb on + strand, within AO353_25550 at 5637.592 kb on + strand, within AO353_25550 at 5637.592 kb on + strand, within AO353_25550 at 5637.592 kb on + strand at 5637.592 kb on + strand, within AO353_25550 at 5637.592 kb on + strand, within AO353_25550 at 5637.592 kb on + strand, within AO353_25550 at 5637.760 kb on + strand, within AO353_25550 at 5637.892 kb on + strand, within AO353_25550 at 5637.892 kb on + strand, within AO353_25550 at 5637.892 kb on + strand, within AO353_25550 at 5637.892 kb on + strand, within AO353_25550 at 5637.892 kb on + strand, within AO353_25550 at 5638.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 5,636,653 + AO353_25550 0.10 -0.2 5,636,776 + AO353_25550 0.18 -1.6 5,637,061 + AO353_25550 0.35 -1.9 5,637,061 + AO353_25550 0.35 +1.0 5,637,178 + AO353_25550 0.42 -0.7 5,637,259 + AO353_25550 0.47 -0.6 5,637,259 + AO353_25550 0.47 -2.9 5,637,424 + AO353_25550 0.57 -0.4 5,637,424 + AO353_25550 0.57 -3.1 5,637,424 + AO353_25550 0.57 -2.3 5,637,424 + AO353_25550 0.57 -3.0 5,637,424 + AO353_25550 0.57 -2.9 5,637,424 + AO353_25550 0.57 -1.5 5,637,424 + AO353_25550 0.57 -0.9 5,637,424 + AO353_25550 0.57 -1.9 5,637,592 + AO353_25550 0.67 +0.7 5,637,592 + AO353_25550 0.67 -2.3 5,637,592 + -0.6 5,637,592 + AO353_25550 0.67 -1.4 5,637,592 + AO353_25550 0.67 +0.1 5,637,592 + AO353_25550 0.67 -1.3 5,637,760 + AO353_25550 0.77 -0.9 5,637,892 + AO353_25550 0.85 -1.8 5,637,892 + AO353_25550 0.85 +0.1 5,637,892 + AO353_25550 0.85 -1.3 5,637,892 + AO353_25550 0.85 -1.6 5,637,892 + AO353_25550 0.85 -0.5 5,638,081 + -2.2
Or see this region's nucleotide sequence