Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25410

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25400 and AO353_25405 overlap by 4 nucleotidesAO353_25405 and AO353_25410 are separated by 304 nucleotidesAO353_25410 and AO353_25415 are separated by 57 nucleotides AO353_25400: AO353_25400 - molybdenum cofactor biosynthesis protein MoaA, at 5,600,550 to 5,601,755 _25400 AO353_25405: AO353_25405 - molybdenum cofactor biosynthesis protein B, at 5,601,752 to 5,602,291 _25405 AO353_25410: AO353_25410 - LysR family transcriptional regulator, at 5,602,596 to 5,603,486 _25410 AO353_25415: AO353_25415 - LysR family transcriptional regulator, at 5,603,544 to 5,604,431 _25415 Position (kb) 5602 5603 5604Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5602.081 kb on + strand, within AO353_25405at 5602.081 kb on + strand, within AO353_25405at 5602.081 kb on + strand, within AO353_25405at 5602.081 kb on + strand, within AO353_25405at 5602.082 kb on - strand, within AO353_25405at 5602.082 kb on - strand, within AO353_25405at 5602.082 kb on - strand, within AO353_25405at 5602.126 kb on - strand, within AO353_25405at 5602.126 kb on - strand, within AO353_25405at 5602.147 kb on + strand, within AO353_25405at 5602.208 kb on - strand, within AO353_25405at 5602.208 kb on - strand, within AO353_25405at 5602.208 kb on - strandat 5602.219 kb on - strand, within AO353_25405at 5602.219 kb on - strand, within AO353_25405at 5602.252 kb on + strandat 5602.253 kb on - strandat 5602.268 kb on + strandat 5602.269 kb on - strandat 5602.282 kb on + strandat 5602.283 kb on - strandat 5602.359 kb on - strandat 5602.359 kb on - strandat 5602.359 kb on - strandat 5602.422 kb on - strandat 5602.422 kb on - strandat 5602.422 kb on - strandat 5602.424 kb on + strandat 5602.424 kb on + strandat 5602.425 kb on - strandat 5602.435 kb on - strandat 5602.450 kb on - strandat 5602.474 kb on + strandat 5602.474 kb on + strandat 5602.474 kb on + strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.551 kb on + strandat 5602.551 kb on + strandat 5602.552 kb on - strandat 5602.560 kb on + strandat 5602.560 kb on + strandat 5602.561 kb on - strandat 5602.561 kb on - strandat 5602.676 kb on + strandat 5602.676 kb on + strandat 5602.677 kb on - strandat 5602.677 kb on - strandat 5602.861 kb on + strand, within AO353_25410at 5602.918 kb on - strand, within AO353_25410at 5602.918 kb on - strand, within AO353_25410at 5602.937 kb on + strand, within AO353_25410at 5602.938 kb on - strand, within AO353_25410at 5602.987 kb on + strand, within AO353_25410at 5602.988 kb on - strand, within AO353_25410at 5602.988 kb on - strand, within AO353_25410at 5603.003 kb on + strand, within AO353_25410at 5603.031 kb on + strand, within AO353_25410at 5603.032 kb on - strand, within AO353_25410at 5603.055 kb on + strand, within AO353_25410at 5603.055 kb on + strand, within AO353_25410at 5603.055 kb on + strand, within AO353_25410at 5603.056 kb on - strand, within AO353_25410at 5603.100 kb on + strand, within AO353_25410at 5603.248 kb on + strand, within AO353_25410at 5603.249 kb on - strand, within AO353_25410at 5603.249 kb on - strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.269 kb on - strand, within AO353_25410at 5603.269 kb on - strand, within AO353_25410at 5603.360 kb on + strand, within AO353_25410at 5603.360 kb on + strand, within AO353_25410at 5603.652 kb on + strand, within AO353_25415at 5603.653 kb on - strand, within AO353_25415at 5603.653 kb on - strand, within AO353_25415at 5603.776 kb on + strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.989 kb on + strand, within AO353_25415at 5603.990 kb on - strand, within AO353_25415at 5604.042 kb on - strand, within AO353_25415at 5604.042 kb on - strand, within AO353_25415at 5604.042 kb on - strand, within AO353_25415at 5604.223 kb on + strand, within AO353_25415at 5604.223 kb on + strand, within AO353_25415at 5604.223 kb on + strand, within AO353_25415at 5604.224 kb on - strand, within AO353_25415at 5604.361 kb on + strandat 5604.361 kb on + strandat 5604.362 kb on - strandat 5604.478 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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5,602,081 + AO353_25405 0.61 +0.4
5,602,081 + AO353_25405 0.61 -1.4
5,602,081 + AO353_25405 0.61 -0.9
5,602,081 + AO353_25405 0.61 +0.9
5,602,082 - AO353_25405 0.61 -1.2
5,602,082 - AO353_25405 0.61 -0.3
5,602,082 - AO353_25405 0.61 +0.4
5,602,126 - AO353_25405 0.69 -0.2
5,602,126 - AO353_25405 0.69 -0.3
5,602,147 + AO353_25405 0.73 -0.1
5,602,208 - AO353_25405 0.84 +1.2
5,602,208 - AO353_25405 0.84 -1.4
5,602,208 - +1.4
5,602,219 - AO353_25405 0.86 -1.1
5,602,219 - AO353_25405 0.86 -1.2
5,602,252 + -0.1
5,602,253 - +0.7
5,602,268 + +0.1
5,602,269 - +0.7
5,602,282 + -0.8
5,602,283 - +0.3
5,602,359 - +0.4
5,602,359 - -0.6
5,602,359 - +0.4
5,602,422 - +0.2
5,602,422 - +1.0
5,602,422 - -2.2
5,602,424 + +0.5
5,602,424 + +0.5
5,602,425 - -1.8
5,602,435 - +0.3
5,602,450 - +0.1
5,602,474 + +0.2
5,602,474 + +1.4
5,602,474 + +1.2
5,602,475 - -0.2
5,602,475 - -0.0
5,602,475 - -1.6
5,602,475 - -1.9
5,602,475 - +0.5
5,602,475 - +0.5
5,602,475 - +0.7
5,602,475 - +0.0
5,602,475 - -0.0
5,602,551 + +2.6
5,602,551 + +0.8
5,602,552 - -0.0
5,602,560 + +0.2
5,602,560 + +1.4
5,602,561 - -0.2
5,602,561 - -0.2
5,602,676 + -0.9
5,602,676 + +2.4
5,602,677 - -1.8
5,602,677 - +1.4
5,602,861 + AO353_25410 0.30 -2.5
5,602,918 - AO353_25410 0.36 +0.6
5,602,918 - AO353_25410 0.36 -0.4
5,602,937 + AO353_25410 0.38 +0.1
5,602,938 - AO353_25410 0.38 -1.6
5,602,987 + AO353_25410 0.44 +0.5
5,602,988 - AO353_25410 0.44 +0.3
5,602,988 - AO353_25410 0.44 +0.7
5,603,003 + AO353_25410 0.46 +0.4
5,603,031 + AO353_25410 0.49 +0.3
5,603,032 - AO353_25410 0.49 +0.2
5,603,055 + AO353_25410 0.52 +0.7
5,603,055 + AO353_25410 0.52 +0.1
5,603,055 + AO353_25410 0.52 -1.3
5,603,056 - AO353_25410 0.52 +0.2
5,603,100 + AO353_25410 0.57 +1.0
5,603,248 + AO353_25410 0.73 -1.6
5,603,249 - AO353_25410 0.73 +2.7
5,603,249 - AO353_25410 0.73 +0.7
5,603,268 + AO353_25410 0.75 -0.4
5,603,268 + AO353_25410 0.75 -1.5
5,603,268 + AO353_25410 0.75 +0.2
5,603,268 + AO353_25410 0.75 -0.6
5,603,269 - AO353_25410 0.76 +0.2
5,603,269 - AO353_25410 0.76 +0.4
5,603,360 + AO353_25410 0.86 -0.6
5,603,360 + AO353_25410 0.86 +0.1
5,603,652 + AO353_25415 0.12 -1.8
5,603,653 - AO353_25415 0.12 +2.4
5,603,653 - AO353_25415 0.12 -2.9
5,603,776 + AO353_25415 0.26 +0.7
5,603,777 - AO353_25415 0.26 -1.9
5,603,777 - AO353_25415 0.26 +0.4
5,603,777 - AO353_25415 0.26 -0.9
5,603,777 - AO353_25415 0.26 -1.2
5,603,989 + AO353_25415 0.50 +0.2
5,603,990 - AO353_25415 0.50 -1.1
5,604,042 - AO353_25415 0.56 -1.1
5,604,042 - AO353_25415 0.56 +0.4
5,604,042 - AO353_25415 0.56 -2.1
5,604,223 + AO353_25415 0.76 +0.8
5,604,223 + AO353_25415 0.76 -1.2
5,604,223 + AO353_25415 0.76 -1.2
5,604,224 - AO353_25415 0.77 -0.8
5,604,361 + -1.3
5,604,361 + +0.4
5,604,362 - -0.7
5,604,478 + -0.9

Or see this region's nucleotide sequence