Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24610

Experiment: Rifampicin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_24605 and AO353_24610 are separated by 173 nucleotidesAO353_24610 and AO353_24615 overlap by 10 nucleotides AO353_24605: AO353_24605 - hypothetical protein, at 5,411,503 to 5,412,609 _24605 AO353_24610: AO353_24610 - hypothetical protein, at 5,412,783 to 5,413,580 _24610 AO353_24615: AO353_24615 - hypothetical protein, at 5,413,571 to 5,415,565 _24615 Position (kb) 5412 5413 5414Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5411.907 kb on - strand, within AO353_24605at 5412.022 kb on + strand, within AO353_24605at 5412.043 kb on - strand, within AO353_24605at 5412.376 kb on - strand, within AO353_24605at 5412.414 kb on + strand, within AO353_24605at 5412.432 kb on + strand, within AO353_24605at 5412.478 kb on + strand, within AO353_24605at 5412.549 kb on + strandat 5412.572 kb on + strandat 5412.572 kb on + strandat 5412.572 kb on + strandat 5412.573 kb on - strandat 5412.573 kb on - strandat 5412.577 kb on - strandat 5412.577 kb on - strandat 5412.580 kb on - strandat 5412.705 kb on + strandat 5412.705 kb on + strandat 5412.706 kb on - strandat 5412.741 kb on + strandat 5412.741 kb on + strandat 5412.770 kb on - strandat 5412.770 kb on - strandat 5412.770 kb on - strandat 5412.840 kb on + strandat 5412.841 kb on - strandat 5412.841 kb on - strandat 5412.841 kb on - strandat 5412.841 kb on - strandat 5412.847 kb on - strandat 5412.900 kb on + strand, within AO353_24610at 5412.915 kb on + strand, within AO353_24610at 5412.916 kb on - strand, within AO353_24610at 5412.946 kb on - strand, within AO353_24610at 5412.950 kb on + strand, within AO353_24610at 5412.981 kb on + strand, within AO353_24610at 5413.037 kb on + strand, within AO353_24610at 5413.042 kb on - strand, within AO353_24610at 5413.042 kb on - strand, within AO353_24610at 5413.074 kb on + strand, within AO353_24610at 5413.151 kb on + strand, within AO353_24610at 5413.253 kb on + strand, within AO353_24610at 5413.254 kb on - strand, within AO353_24610at 5413.254 kb on - strand, within AO353_24610at 5413.430 kb on + strand, within AO353_24610at 5413.431 kb on - strand, within AO353_24610at 5413.438 kb on + strand, within AO353_24610at 5413.518 kb on + strandat 5413.534 kb on - strandat 5413.640 kb on + strandat 5413.641 kb on - strandat 5413.644 kb on + strandat 5413.644 kb on + strandat 5413.645 kb on - strandat 5413.647 kb on - strandat 5413.678 kb on + strandat 5413.791 kb on + strand, within AO353_24615at 5413.825 kb on + strand, within AO353_24615at 5413.825 kb on + strand, within AO353_24615at 5413.825 kb on + strand, within AO353_24615at 5413.825 kb on + strand, within AO353_24615at 5413.825 kb on + strand, within AO353_24615at 5413.825 kb on + strand, within AO353_24615at 5413.825 kb on + strand, within AO353_24615at 5413.826 kb on - strand, within AO353_24615at 5413.826 kb on - strand, within AO353_24615at 5413.826 kb on - strand, within AO353_24615at 5413.902 kb on + strand, within AO353_24615at 5413.903 kb on - strand, within AO353_24615at 5413.916 kb on - strandat 5413.926 kb on + strand, within AO353_24615at 5413.927 kb on - strand, within AO353_24615at 5413.945 kb on + strand, within AO353_24615at 5413.945 kb on + strand, within AO353_24615at 5413.945 kb on + strand, within AO353_24615at 5413.946 kb on - strand, within AO353_24615at 5413.999 kb on + strand, within AO353_24615at 5413.999 kb on + strand, within AO353_24615at 5414.000 kb on - strand, within AO353_24615at 5414.001 kb on + strand, within AO353_24615at 5414.001 kb on + strand, within AO353_24615at 5414.001 kb on + strand, within AO353_24615at 5414.001 kb on + strand, within AO353_24615at 5414.002 kb on - strand, within AO353_24615at 5414.002 kb on - strand, within AO353_24615at 5414.041 kb on + strand, within AO353_24615at 5414.206 kb on + strand, within AO353_24615at 5414.220 kb on - strand, within AO353_24615at 5414.260 kb on + strand, within AO353_24615at 5414.260 kb on + strand, within AO353_24615at 5414.260 kb on + strand, within AO353_24615at 5414.260 kb on + strand, within AO353_24615at 5414.260 kb on + strand, within AO353_24615at 5414.260 kb on + strand, within AO353_24615at 5414.260 kb on + strand, within AO353_24615at 5414.260 kb on + strand, within AO353_24615at 5414.260 kb on + strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.261 kb on - strand, within AO353_24615at 5414.267 kb on + strand, within AO353_24615at 5414.359 kb on + strand, within AO353_24615at 5414.359 kb on + strand, within AO353_24615at 5414.359 kb on + strand, within AO353_24615at 5414.360 kb on - strand, within AO353_24615at 5414.360 kb on - strand, within AO353_24615at 5414.360 kb on - strand, within AO353_24615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
remove
5,411,907 - AO353_24605 0.36 -1.6
5,412,022 + AO353_24605 0.47 +0.2
5,412,043 - AO353_24605 0.49 +1.4
5,412,376 - AO353_24605 0.79 +1.7
5,412,414 + AO353_24605 0.82 -0.0
5,412,432 + AO353_24605 0.84 +0.1
5,412,478 + AO353_24605 0.88 -0.4
5,412,549 + +0.1
5,412,572 + -0.4
5,412,572 + -0.8
5,412,572 + -1.6
5,412,573 - -0.1
5,412,573 - -0.6
5,412,577 - -0.3
5,412,577 - -0.0
5,412,580 - -1.2
5,412,705 + -0.6
5,412,705 + -0.2
5,412,706 - -0.5
5,412,741 + +1.0
5,412,741 + -1.2
5,412,770 - -0.5
5,412,770 - +0.1
5,412,770 - +2.8
5,412,840 + +1.2
5,412,841 - -0.9
5,412,841 - +1.4
5,412,841 - -0.6
5,412,841 - -0.3
5,412,847 - -1.2
5,412,900 + AO353_24610 0.15 -0.8
5,412,915 + AO353_24610 0.17 -2.5
5,412,916 - AO353_24610 0.17 +1.0
5,412,946 - AO353_24610 0.20 -0.5
5,412,950 + AO353_24610 0.21 -1.3
5,412,981 + AO353_24610 0.25 -0.4
5,413,037 + AO353_24610 0.32 -0.5
5,413,042 - AO353_24610 0.32 +1.9
5,413,042 - AO353_24610 0.32 +1.0
5,413,074 + AO353_24610 0.36 -1.4
5,413,151 + AO353_24610 0.46 -0.8
5,413,253 + AO353_24610 0.59 -0.0
5,413,254 - AO353_24610 0.59 -0.9
5,413,254 - AO353_24610 0.59 -0.2
5,413,430 + AO353_24610 0.81 -1.4
5,413,431 - AO353_24610 0.81 +0.7
5,413,438 + AO353_24610 0.82 -0.4
5,413,518 + -0.2
5,413,534 - +1.4
5,413,640 + -0.7
5,413,641 - -0.2
5,413,644 + -0.6
5,413,644 + -1.2
5,413,645 - +1.0
5,413,647 - +0.4
5,413,678 + -0.2
5,413,791 + AO353_24615 0.11 -1.6
5,413,825 + AO353_24615 0.13 -1.1
5,413,825 + AO353_24615 0.13 -0.2
5,413,825 + AO353_24615 0.13 -0.6
5,413,825 + AO353_24615 0.13 +1.1
5,413,825 + AO353_24615 0.13 +2.1
5,413,825 + AO353_24615 0.13 +0.1
5,413,825 + AO353_24615 0.13 +0.6
5,413,826 - AO353_24615 0.13 +0.3
5,413,826 - AO353_24615 0.13 +0.7
5,413,826 - AO353_24615 0.13 -1.2
5,413,902 + AO353_24615 0.17 -0.9
5,413,903 - AO353_24615 0.17 -0.6
5,413,916 - -0.6
5,413,926 + AO353_24615 0.18 -0.2
5,413,927 - AO353_24615 0.18 +0.5
5,413,945 + AO353_24615 0.19 -0.9
5,413,945 + AO353_24615 0.19 -0.6
5,413,945 + AO353_24615 0.19 +0.3
5,413,946 - AO353_24615 0.19 -0.3
5,413,999 + AO353_24615 0.21 +2.0
5,413,999 + AO353_24615 0.21 +1.6
5,414,000 - AO353_24615 0.22 -0.4
5,414,001 + AO353_24615 0.22 +0.7
5,414,001 + AO353_24615 0.22 +1.4
5,414,001 + AO353_24615 0.22 -0.2
5,414,001 + AO353_24615 0.22 -1.1
5,414,002 - AO353_24615 0.22 +3.4
5,414,002 - AO353_24615 0.22 +0.5
5,414,041 + AO353_24615 0.24 -0.3
5,414,206 + AO353_24615 0.32 +0.6
5,414,220 - AO353_24615 0.33 +0.5
5,414,260 + AO353_24615 0.35 -0.2
5,414,260 + AO353_24615 0.35 -0.3
5,414,260 + AO353_24615 0.35 +2.4
5,414,260 + AO353_24615 0.35 +0.5
5,414,260 + AO353_24615 0.35 -0.0
5,414,260 + AO353_24615 0.35 -0.8
5,414,260 + AO353_24615 0.35 -1.2
5,414,260 + AO353_24615 0.35 -0.4
5,414,260 + AO353_24615 0.35 -0.6
5,414,261 - AO353_24615 0.35 -0.2
5,414,261 - AO353_24615 0.35 +0.1
5,414,261 - AO353_24615 0.35 -3.1
5,414,261 - AO353_24615 0.35 -0.0
5,414,261 - AO353_24615 0.35 -2.3
5,414,261 - AO353_24615 0.35 +0.7
5,414,261 - AO353_24615 0.35 +0.4
5,414,261 - AO353_24615 0.35 +0.2
5,414,261 - AO353_24615 0.35 -2.1
5,414,261 - AO353_24615 0.35 +0.6
5,414,261 - AO353_24615 0.35 -0.2
5,414,261 - AO353_24615 0.35 -0.9
5,414,261 - AO353_24615 0.35 +0.2
5,414,261 - AO353_24615 0.35 -1.7
5,414,261 - AO353_24615 0.35 -1.6
5,414,261 - AO353_24615 0.35 +0.8
5,414,267 + AO353_24615 0.35 +1.0
5,414,359 + AO353_24615 0.39 +0.1
5,414,359 + AO353_24615 0.39 +0.2
5,414,359 + AO353_24615 0.39 +1.2
5,414,360 - AO353_24615 0.40 +0.5
5,414,360 - AO353_24615 0.40 -0.2
5,414,360 - AO353_24615 0.40 +1.4

Or see this region's nucleotide sequence