Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23545 and AO353_23550 are separated by 15 nucleotides AO353_23550 and AO353_23555 are separated by 119 nucleotides AO353_23555 and AO353_23560 are separated by 334 nucleotides
AO353_23545: AO353_23545 - NADH oxidase, at 5,156,203 to 5,157,216
_23545
AO353_23550: AO353_23550 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 5,157,232 to 5,158,005
_23550
AO353_23555: AO353_23555 - DNA polymerase III subunit epsilon, at 5,158,125 to 5,158,883
_23555
AO353_23560: AO353_23560 - lysine decarboxylase, at 5,159,218 to 5,161,473
_23560
Position (kb) 5158
5159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5157.184 kb on + strand at 5157.185 kb on - strand at 5157.187 kb on + strand at 5157.215 kb on - strand at 5157.241 kb on + strand at 5157.241 kb on + strand at 5157.242 kb on - strand at 5157.242 kb on - strand at 5157.242 kb on - strand at 5157.242 kb on - strand at 5157.306 kb on + strand at 5157.307 kb on - strand at 5157.424 kb on + strand, within AO353_23550 at 5157.480 kb on + strand at 5157.481 kb on - strand, within AO353_23550 at 5157.481 kb on - strand, within AO353_23550 at 5157.481 kb on - strand, within AO353_23550 at 5157.482 kb on + strand, within AO353_23550 at 5157.482 kb on + strand, within AO353_23550 at 5157.482 kb on + strand at 5157.482 kb on + strand, within AO353_23550 at 5157.482 kb on + strand, within AO353_23550 at 5157.482 kb on + strand, within AO353_23550 at 5157.482 kb on + strand, within AO353_23550 at 5157.482 kb on + strand, within AO353_23550 at 5157.482 kb on + strand, within AO353_23550 at 5157.482 kb on + strand, within AO353_23550 at 5157.483 kb on - strand, within AO353_23550 at 5157.483 kb on - strand, within AO353_23550 at 5157.483 kb on - strand, within AO353_23550 at 5157.533 kb on - strand, within AO353_23550 at 5157.686 kb on - strand, within AO353_23550 at 5157.958 kb on + strand at 5157.958 kb on + strand at 5157.958 kb on + strand at 5157.958 kb on + strand at 5157.958 kb on + strand at 5157.959 kb on - strand at 5158.077 kb on + strand at 5158.881 kb on + strand at 5158.881 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.046 kb on + strand at 5159.166 kb on - strand at 5159.176 kb on + strand at 5159.176 kb on + strand at 5159.187 kb on + strand at 5159.188 kb on - strand at 5159.221 kb on + strand at 5159.221 kb on + strand at 5159.221 kb on + strand at 5159.221 kb on + strand at 5159.221 kb on + strand at 5159.221 kb on + strand at 5159.221 kb on + strand at 5159.221 kb on + strand at 5159.221 kb on + strand at 5159.222 kb on - strand at 5159.222 kb on - strand at 5159.222 kb on - strand at 5159.222 kb on - strand at 5159.222 kb on - strand at 5159.222 kb on - strand at 5159.222 kb on - strand at 5159.222 kb on - strand at 5159.222 kb on - strand at 5159.223 kb on + strand at 5159.223 kb on + strand at 5159.224 kb on - strand at 5159.246 kb on + strand at 5159.246 kb on + strand at 5159.246 kb on + strand at 5159.247 kb on - strand at 5159.247 kb on - strand at 5159.353 kb on + strand at 5159.353 kb on + strand at 5159.353 kb on + strand at 5159.444 kb on + strand, within AO353_23560 at 5159.584 kb on + strand, within AO353_23560 at 5159.585 kb on - strand, within AO353_23560 at 5159.585 kb on - strand, within AO353_23560 at 5159.585 kb on - strand, within AO353_23560 at 5159.585 kb on - strand, within AO353_23560 at 5159.585 kb on - strand, within AO353_23560 at 5159.585 kb on - strand, within AO353_23560 at 5159.585 kb on - strand, within AO353_23560 at 5159.707 kb on + strand, within AO353_23560 at 5159.707 kb on + strand, within AO353_23560 at 5159.707 kb on + strand, within AO353_23560 at 5159.708 kb on - strand, within AO353_23560 at 5159.708 kb on - strand, within AO353_23560 at 5159.708 kb on - strand, within AO353_23560 at 5159.708 kb on - strand, within AO353_23560 at 5159.708 kb on - strand, within AO353_23560 at 5159.708 kb on - strand, within AO353_23560 at 5159.746 kb on + strand, within AO353_23560 at 5159.763 kb on - strand, within AO353_23560 at 5159.797 kb on - strand, within AO353_23560 at 5159.797 kb on - strand, within AO353_23560 at 5159.797 kb on - strand, within AO353_23560 at 5159.797 kb on - strand, within AO353_23560
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 5,157,184 + -3.0 5,157,185 - +0.9 5,157,187 + -0.9 5,157,215 - +1.9 5,157,241 + -0.6 5,157,241 + +1.4 5,157,242 - +0.2 5,157,242 - -1.3 5,157,242 - -0.9 5,157,242 - +0.1 5,157,306 + +1.0 5,157,307 - -0.6 5,157,424 + AO353_23550 0.25 -0.5 5,157,480 + -0.9 5,157,481 - AO353_23550 0.32 +0.7 5,157,481 - AO353_23550 0.32 +0.4 5,157,481 - AO353_23550 0.32 +0.0 5,157,482 + AO353_23550 0.32 +1.6 5,157,482 + AO353_23550 0.32 +0.8 5,157,482 + +2.4 5,157,482 + AO353_23550 0.32 -1.6 5,157,482 + AO353_23550 0.32 -0.6 5,157,482 + AO353_23550 0.32 +0.7 5,157,482 + AO353_23550 0.32 -1.1 5,157,482 + AO353_23550 0.32 +0.1 5,157,482 + AO353_23550 0.32 -1.2 5,157,482 + AO353_23550 0.32 +1.1 5,157,483 - AO353_23550 0.32 -0.9 5,157,483 - AO353_23550 0.32 +0.5 5,157,483 - AO353_23550 0.32 +0.1 5,157,533 - AO353_23550 0.39 +1.1 5,157,686 - AO353_23550 0.59 -0.0 5,157,958 + +0.7 5,157,958 + +0.1 5,157,958 + +0.4 5,157,958 + +0.8 5,157,958 + -1.4 5,157,959 - +1.4 5,158,077 + -1.4 5,158,881 + +0.9 5,158,881 + +0.2 5,159,046 + +0.1 5,159,046 + -0.6 5,159,046 + +0.5 5,159,046 + -0.4 5,159,046 + -2.2 5,159,046 + +0.4 5,159,046 + +0.4 5,159,046 + -2.4 5,159,046 + -0.1 5,159,046 + +0.5 5,159,046 + -0.2 5,159,166 - -1.0 5,159,176 + -0.0 5,159,176 + -0.0 5,159,187 + -0.4 5,159,188 - -0.9 5,159,221 + +0.8 5,159,221 + +1.1 5,159,221 + +1.2 5,159,221 + -1.3 5,159,221 + -1.6 5,159,221 + -0.8 5,159,221 + -0.2 5,159,221 + -0.9 5,159,221 + -0.9 5,159,222 - -1.4 5,159,222 - -0.8 5,159,222 - -1.0 5,159,222 - +1.8 5,159,222 - -0.4 5,159,222 - +0.4 5,159,222 - +1.2 5,159,222 - -0.2 5,159,222 - +1.4 5,159,223 + -0.5 5,159,223 + +0.1 5,159,224 - +0.8 5,159,246 + -2.4 5,159,246 + +0.5 5,159,246 + -1.2 5,159,247 - +0.0 5,159,247 - +0.7 5,159,353 + -1.0 5,159,353 + +0.7 5,159,353 + -0.5 5,159,444 + AO353_23560 0.10 -0.8 5,159,584 + AO353_23560 0.16 -1.9 5,159,585 - AO353_23560 0.16 +0.5 5,159,585 - AO353_23560 0.16 +0.2 5,159,585 - AO353_23560 0.16 -0.9 5,159,585 - AO353_23560 0.16 -1.4 5,159,585 - AO353_23560 0.16 -0.0 5,159,585 - AO353_23560 0.16 -0.5 5,159,585 - AO353_23560 0.16 +0.8 5,159,707 + AO353_23560 0.22 +3.4 5,159,707 + AO353_23560 0.22 +0.3 5,159,707 + AO353_23560 0.22 -0.9 5,159,708 - AO353_23560 0.22 -0.8 5,159,708 - AO353_23560 0.22 +0.4 5,159,708 - AO353_23560 0.22 +0.9 5,159,708 - AO353_23560 0.22 -1.6 5,159,708 - AO353_23560 0.22 +0.1 5,159,708 - AO353_23560 0.22 -1.0 5,159,746 + AO353_23560 0.23 +0.4 5,159,763 - AO353_23560 0.24 +0.4 5,159,797 - AO353_23560 0.26 +1.4 5,159,797 - AO353_23560 0.26 +0.2 5,159,797 - AO353_23560 0.26 -0.2 5,159,797 - AO353_23560 0.26 +1.4
Or see this region's nucleotide sequence