Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21455

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21440 and AO353_21445 are separated by 39 nucleotidesAO353_21445 and AO353_21450 overlap by 4 nucleotidesAO353_21450 and AO353_21455 overlap by 4 nucleotidesAO353_21455 and AO353_21460 overlap by 4 nucleotides AO353_21440: AO353_21440 - hypothetical protein, at 4,692,221 to 4,692,658 _21440 AO353_21445: AO353_21445 - cation:proton antiporter, at 4,692,698 to 4,693,066 _21445 AO353_21450: AO353_21450 - cation:proton antiporter, at 4,693,063 to 4,693,341 _21450 AO353_21455: AO353_21455 - cation:proton antiporter, at 4,693,338 to 4,693,826 _21455 AO353_21460: AO353_21460 - cation:proton antiporter, at 4,693,823 to 4,695,508 _21460 Position (kb) 4693 4694Strain fitness (log2 ratio) -2 -1 0 1at 4692.603 kb on - strand, within AO353_21440at 4692.663 kb on + strandat 4692.664 kb on - strandat 4692.664 kb on - strandat 4692.951 kb on + strand, within AO353_21445at 4692.951 kb on + strand, within AO353_21445at 4692.951 kb on + strand, within AO353_21445at 4692.951 kb on + strand, within AO353_21445at 4692.951 kb on + strand, within AO353_21445at 4692.952 kb on - strand, within AO353_21445at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.155 kb on - strand, within AO353_21450at 4693.155 kb on - strand, within AO353_21450at 4693.155 kb on - strand, within AO353_21450at 4693.155 kb on - strand, within AO353_21450at 4693.170 kb on - strand, within AO353_21450at 4693.209 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.217 kb on + strand, within AO353_21450at 4693.217 kb on + strand, within AO353_21450at 4693.218 kb on - strand, within AO353_21450at 4693.218 kb on - strand, within AO353_21450at 4693.218 kb on - strand, within AO353_21450at 4693.218 kb on - strand, within AO353_21450at 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.370 kb on - strandat 4693.370 kb on - strandat 4693.370 kb on - strandat 4693.370 kb on - strandat 4693.370 kb on - strandat 4693.370 kb on - strandat 4693.667 kb on + strand, within AO353_21455at 4693.734 kb on + strand, within AO353_21455at 4693.735 kb on - strand, within AO353_21455at 4693.735 kb on - strand, within AO353_21455at 4693.899 kb on + strandat 4693.899 kb on + strandat 4693.899 kb on + strandat 4693.899 kb on + strandat 4693.899 kb on + strandat 4693.899 kb on + strandat 4693.899 kb on + strandat 4693.899 kb on + strandat 4693.899 kb on + strandat 4693.900 kb on - strandat 4693.900 kb on - strandat 4693.900 kb on - strandat 4693.900 kb on - strandat 4693.900 kb on - strandat 4693.976 kb on + strandat 4693.976 kb on + strandat 4693.976 kb on + strandat 4693.976 kb on + strandat 4693.976 kb on + strandat 4693.976 kb on + strandat 4693.977 kb on - strandat 4693.977 kb on - strandat 4693.977 kb on - strandat 4693.977 kb on - strandat 4694.198 kb on - strand, within AO353_21460at 4694.490 kb on + strand, within AO353_21460at 4694.490 kb on + strand, within AO353_21460at 4694.490 kb on + strand, within AO353_21460at 4694.490 kb on + strand, within AO353_21460at 4694.490 kb on + strand, within AO353_21460at 4694.490 kb on + strand, within AO353_21460at 4694.491 kb on - strand, within AO353_21460at 4694.626 kb on + strand, within AO353_21460at 4694.626 kb on + strand, within AO353_21460at 4694.626 kb on + strand, within AO353_21460at 4694.626 kb on + strand, within AO353_21460at 4694.627 kb on - strand, within AO353_21460at 4694.627 kb on - strand, within AO353_21460at 4694.627 kb on - strand, within AO353_21460at 4694.627 kb on - strand, within AO353_21460at 4694.627 kb on - strand, within AO353_21460at 4694.647 kb on - strand, within AO353_21460at 4694.647 kb on - strand, within AO353_21460at 4694.647 kb on - strand, within AO353_21460at 4694.670 kb on + strand, within AO353_21460at 4694.670 kb on + strand, within AO353_21460at 4694.671 kb on - strand, within AO353_21460at 4694.727 kb on + strand, within AO353_21460at 4694.727 kb on + strand, within AO353_21460at 4694.728 kb on - strand, within AO353_21460at 4694.728 kb on - strand, within AO353_21460at 4694.728 kb on - strand, within AO353_21460at 4694.787 kb on + strand, within AO353_21460at 4694.787 kb on + strand, within AO353_21460at 4694.788 kb on - strand, within AO353_21460

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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4,692,603 - AO353_21440 0.87 +1.0
4,692,663 + +1.1
4,692,664 - -1.6
4,692,664 - -0.3
4,692,951 + AO353_21445 0.69 +0.4
4,692,951 + AO353_21445 0.69 -0.7
4,692,951 + AO353_21445 0.69 +0.2
4,692,951 + AO353_21445 0.69 -0.3
4,692,951 + AO353_21445 0.69 -0.0
4,692,952 - AO353_21445 0.69 -0.8
4,693,154 + AO353_21450 0.33 -1.9
4,693,154 + AO353_21450 0.33 -0.3
4,693,154 + AO353_21450 0.33 -1.6
4,693,154 + AO353_21450 0.33 +0.3
4,693,154 + AO353_21450 0.33 -1.3
4,693,154 + AO353_21450 0.33 -2.0
4,693,154 + AO353_21450 0.33 -0.7
4,693,155 - AO353_21450 0.33 +1.6
4,693,155 - AO353_21450 0.33 +1.1
4,693,155 - AO353_21450 0.33 -0.2
4,693,155 - AO353_21450 0.33 -1.0
4,693,170 - AO353_21450 0.38 -1.4
4,693,209 + AO353_21450 0.52 -0.0
4,693,211 + AO353_21450 0.53 +0.7
4,693,211 + AO353_21450 0.53 -0.0
4,693,211 + AO353_21450 0.53 -1.0
4,693,211 + AO353_21450 0.53 -0.9
4,693,211 + AO353_21450 0.53 -2.0
4,693,211 + AO353_21450 0.53 +0.3
4,693,211 + AO353_21450 0.53 +0.3
4,693,211 + AO353_21450 0.53 +0.1
4,693,211 + AO353_21450 0.53 -0.1
4,693,211 + AO353_21450 0.53 +0.1
4,693,211 + AO353_21450 0.53 +0.6
4,693,212 - AO353_21450 0.53 -1.4
4,693,212 - AO353_21450 0.53 -0.1
4,693,212 - AO353_21450 0.53 -0.0
4,693,212 - AO353_21450 0.53 +1.0
4,693,212 - AO353_21450 0.53 +0.8
4,693,212 - AO353_21450 0.53 +0.8
4,693,212 - AO353_21450 0.53 +1.6
4,693,212 - AO353_21450 0.53 -1.5
4,693,217 + AO353_21450 0.55 +0.3
4,693,217 + AO353_21450 0.55 -1.7
4,693,218 - AO353_21450 0.56 -0.0
4,693,218 - AO353_21450 0.56 -1.0
4,693,218 - AO353_21450 0.56 -0.8
4,693,218 - AO353_21450 0.56 +0.0
4,693,369 + +0.6
4,693,369 + +0.7
4,693,369 + -1.0
4,693,369 + +0.2
4,693,369 + +0.2
4,693,369 + -1.1
4,693,369 + +0.1
4,693,369 + -0.2
4,693,369 + +0.7
4,693,370 - +0.7
4,693,370 - +1.2
4,693,370 - -0.3
4,693,370 - +1.6
4,693,370 - -1.4
4,693,370 - +0.1
4,693,667 + AO353_21455 0.67 -1.3
4,693,734 + AO353_21455 0.81 -2.5
4,693,735 - AO353_21455 0.81 -1.0
4,693,735 - AO353_21455 0.81 -1.8
4,693,899 + +0.4
4,693,899 + -0.9
4,693,899 + -0.2
4,693,899 + -1.6
4,693,899 + +0.6
4,693,899 + -0.4
4,693,899 + -2.0
4,693,899 + -0.7
4,693,899 + -2.0
4,693,900 - +0.3
4,693,900 - -1.3
4,693,900 - +0.3
4,693,900 - -1.9
4,693,900 - +0.2
4,693,976 + +0.5
4,693,976 + +1.0
4,693,976 + +1.6
4,693,976 + +1.0
4,693,976 + +0.9
4,693,976 + +1.2
4,693,977 - -0.0
4,693,977 - +1.3
4,693,977 - -1.4
4,693,977 - -0.4
4,694,198 - AO353_21460 0.22 +0.1
4,694,490 + AO353_21460 0.40 +0.1
4,694,490 + AO353_21460 0.40 -0.3
4,694,490 + AO353_21460 0.40 +0.7
4,694,490 + AO353_21460 0.40 +0.2
4,694,490 + AO353_21460 0.40 +0.8
4,694,490 + AO353_21460 0.40 +0.5
4,694,491 - AO353_21460 0.40 +0.7
4,694,626 + AO353_21460 0.48 -2.0
4,694,626 + AO353_21460 0.48 +0.2
4,694,626 + AO353_21460 0.48 -0.8
4,694,626 + AO353_21460 0.48 +1.0
4,694,627 - AO353_21460 0.48 +0.6
4,694,627 - AO353_21460 0.48 +0.3
4,694,627 - AO353_21460 0.48 -0.4
4,694,627 - AO353_21460 0.48 +0.7
4,694,627 - AO353_21460 0.48 +0.3
4,694,647 - AO353_21460 0.49 -0.4
4,694,647 - AO353_21460 0.49 +1.0
4,694,647 - AO353_21460 0.49 +1.7
4,694,670 + AO353_21460 0.50 -0.3
4,694,670 + AO353_21460 0.50 -0.3
4,694,671 - AO353_21460 0.50 +1.2
4,694,727 + AO353_21460 0.54 +0.4
4,694,727 + AO353_21460 0.54 +1.2
4,694,728 - AO353_21460 0.54 -0.0
4,694,728 - AO353_21460 0.54 +0.9
4,694,728 - AO353_21460 0.54 +1.6
4,694,787 + AO353_21460 0.57 -2.0
4,694,787 + AO353_21460 0.57 -1.9
4,694,788 - AO353_21460 0.57 -0.3

Or see this region's nucleotide sequence