Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19150 and AO353_19155 are separated by 224 nucleotides AO353_19155 and AO353_19160 are separated by 116 nucleotides AO353_19160 and AO353_19165 overlap by 4 nucleotides AO353_19165 and AO353_19170 overlap by 17 nucleotides
AO353_19150: AO353_19150 - aminotransferase, at 4,200,510 to 4,201,721
_19150
AO353_19155: AO353_19155 - peptide methionine sulfoxide reductase, at 4,201,946 to 4,202,341
_19155
AO353_19160: AO353_19160 - glutathione peroxidase, at 4,202,458 to 4,202,943
_19160
AO353_19165: AO353_19165 - MarR family transcriptional regulator, at 4,202,940 to 4,203,401
_19165
AO353_19170: AO353_19170 - histidine kinase, at 4,203,385 to 4,205,712
_19170
Position (kb) 4202
4203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4201.471 kb on + strand, within AO353_19150 at 4201.471 kb on + strand, within AO353_19150 at 4201.471 kb on + strand, within AO353_19150 at 4201.472 kb on - strand, within AO353_19150 at 4201.472 kb on - strand, within AO353_19150 at 4201.472 kb on - strand, within AO353_19150 at 4201.472 kb on - strand, within AO353_19150 at 4201.474 kb on + strand, within AO353_19150 at 4201.474 kb on + strand, within AO353_19150 at 4201.474 kb on + strand, within AO353_19150 at 4201.474 kb on + strand, within AO353_19150 at 4201.474 kb on + strand, within AO353_19150 at 4201.475 kb on - strand, within AO353_19150 at 4201.475 kb on - strand, within AO353_19150 at 4201.475 kb on - strand, within AO353_19150 at 4201.522 kb on + strand, within AO353_19150 at 4201.523 kb on - strand, within AO353_19150 at 4201.544 kb on + strand, within AO353_19150 at 4201.545 kb on - strand, within AO353_19150 at 4201.759 kb on + strand at 4201.759 kb on + strand at 4201.759 kb on + strand at 4201.759 kb on + strand at 4201.759 kb on + strand at 4201.759 kb on + strand at 4201.759 kb on + strand at 4201.759 kb on + strand at 4201.759 kb on + strand at 4201.760 kb on - strand at 4201.760 kb on - strand at 4201.760 kb on - strand at 4201.760 kb on - strand at 4201.760 kb on - strand at 4201.760 kb on - strand at 4201.760 kb on - strand at 4201.766 kb on + strand at 4201.767 kb on - strand at 4201.767 kb on - strand at 4201.767 kb on - strand at 4201.771 kb on + strand at 4201.771 kb on + strand at 4201.772 kb on - strand at 4201.867 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.883 kb on + strand at 4201.884 kb on - strand at 4201.884 kb on - strand at 4201.884 kb on - strand at 4201.884 kb on - strand at 4201.884 kb on - strand at 4201.884 kb on - strand at 4201.884 kb on - strand at 4201.884 kb on - strand at 4201.884 kb on - strand at 4201.910 kb on + strand at 4201.910 kb on + strand at 4201.910 kb on + strand at 4201.911 kb on - strand at 4201.911 kb on - strand at 4201.939 kb on + strand at 4201.939 kb on + strand at 4201.939 kb on + strand at 4201.939 kb on + strand at 4201.939 kb on + strand at 4201.940 kb on - strand at 4201.940 kb on - strand at 4201.940 kb on - strand at 4202.003 kb on + strand, within AO353_19155 at 4202.003 kb on + strand, within AO353_19155 at 4202.003 kb on + strand, within AO353_19155 at 4202.003 kb on + strand, within AO353_19155 at 4202.004 kb on - strand, within AO353_19155 at 4202.004 kb on - strand, within AO353_19155 at 4202.004 kb on - strand, within AO353_19155 at 4202.004 kb on - strand, within AO353_19155 at 4202.004 kb on - strand, within AO353_19155 at 4202.051 kb on + strand, within AO353_19155 at 4202.051 kb on + strand, within AO353_19155 at 4202.051 kb on + strand, within AO353_19155 at 4202.051 kb on + strand, within AO353_19155 at 4202.051 kb on + strand, within AO353_19155 at 4202.051 kb on + strand, within AO353_19155 at 4202.051 kb on + strand, within AO353_19155 at 4202.051 kb on + strand, within AO353_19155 at 4202.052 kb on - strand, within AO353_19155 at 4202.052 kb on - strand, within AO353_19155 at 4202.052 kb on - strand, within AO353_19155 at 4202.052 kb on - strand, within AO353_19155 at 4202.052 kb on - strand, within AO353_19155 at 4202.052 kb on - strand, within AO353_19155 at 4202.052 kb on - strand, within AO353_19155 at 4202.052 kb on - strand, within AO353_19155 at 4202.052 kb on - strand, within AO353_19155 at 4202.078 kb on + strand, within AO353_19155 at 4202.078 kb on + strand, within AO353_19155 at 4202.078 kb on + strand, within AO353_19155 at 4202.078 kb on + strand, within AO353_19155 at 4202.078 kb on + strand, within AO353_19155 at 4202.079 kb on - strand, within AO353_19155 at 4202.079 kb on - strand, within AO353_19155 at 4202.079 kb on - strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.156 kb on + strand, within AO353_19155 at 4202.157 kb on - strand, within AO353_19155 at 4202.157 kb on - strand, within AO353_19155 at 4202.157 kb on - strand, within AO353_19155 at 4202.157 kb on - strand, within AO353_19155 at 4202.157 kb on - strand, within AO353_19155 at 4202.157 kb on - strand, within AO353_19155 at 4202.157 kb on - strand, within AO353_19155 at 4202.262 kb on + strand, within AO353_19155 at 4202.262 kb on + strand, within AO353_19155 at 4202.262 kb on + strand, within AO353_19155 at 4202.262 kb on + strand, within AO353_19155 at 4202.262 kb on + strand, within AO353_19155 at 4202.262 kb on + strand, within AO353_19155 at 4202.262 kb on + strand, within AO353_19155 at 4202.262 kb on + strand, within AO353_19155 at 4202.262 kb on + strand, within AO353_19155 at 4202.263 kb on - strand, within AO353_19155 at 4202.263 kb on - strand, within AO353_19155 at 4202.263 kb on - strand, within AO353_19155 at 4202.263 kb on - strand, within AO353_19155 at 4202.263 kb on - strand, within AO353_19155 at 4202.263 kb on - strand, within AO353_19155 at 4202.297 kb on + strand, within AO353_19155 at 4202.340 kb on - strand at 4202.340 kb on - strand at 4202.478 kb on + strand at 4202.478 kb on + strand at 4202.478 kb on + strand at 4202.479 kb on - strand at 4202.479 kb on - strand at 4202.479 kb on - strand at 4202.541 kb on - strand at 4202.562 kb on + strand, within AO353_19160 at 4202.562 kb on + strand, within AO353_19160 at 4202.584 kb on + strand, within AO353_19160 at 4202.584 kb on + strand, within AO353_19160 at 4202.584 kb on + strand, within AO353_19160 at 4202.584 kb on + strand, within AO353_19160 at 4202.584 kb on + strand, within AO353_19160 at 4202.584 kb on + strand, within AO353_19160 at 4202.584 kb on + strand, within AO353_19160 at 4202.585 kb on - strand, within AO353_19160 at 4202.585 kb on - strand, within AO353_19160 at 4202.614 kb on + strand, within AO353_19160 at 4202.665 kb on - strand, within AO353_19160 at 4202.810 kb on + strand, within AO353_19160 at 4202.811 kb on - strand, within AO353_19160 at 4202.811 kb on - strand, within AO353_19160 at 4202.997 kb on + strand, within AO353_19165 at 4202.997 kb on + strand, within AO353_19165 at 4202.997 kb on + strand, within AO353_19165 at 4203.027 kb on + strand, within AO353_19165 at 4203.027 kb on + strand, within AO353_19165 at 4203.027 kb on + strand, within AO353_19165 at 4203.028 kb on - strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.029 kb on + strand, within AO353_19165 at 4203.030 kb on - strand, within AO353_19165 at 4203.060 kb on + strand, within AO353_19165 at 4203.069 kb on + strand, within AO353_19165 at 4203.069 kb on + strand, within AO353_19165 at 4203.069 kb on + strand, within AO353_19165 at 4203.069 kb on + strand, within AO353_19165 at 4203.070 kb on - strand, within AO353_19165 at 4203.070 kb on - strand, within AO353_19165 at 4203.070 kb on - strand, within AO353_19165 at 4203.088 kb on + strand, within AO353_19165 at 4203.089 kb on - strand, within AO353_19165 at 4203.199 kb on + strand, within AO353_19165 at 4203.199 kb on + strand, within AO353_19165 at 4203.199 kb on + strand, within AO353_19165 at 4203.199 kb on + strand, within AO353_19165 at 4203.199 kb on + strand, within AO353_19165 at 4203.200 kb on - strand, within AO353_19165 at 4203.200 kb on - strand, within AO353_19165 at 4203.200 kb on - strand, within AO353_19165 at 4203.200 kb on - strand, within AO353_19165 at 4203.462 kb on - strand at 4203.536 kb on - strand at 4203.536 kb on - strand at 4203.621 kb on + strand, within AO353_19170 at 4203.621 kb on + strand, within AO353_19170 at 4203.716 kb on - strand, within AO353_19170 at 4203.835 kb on + strand, within AO353_19170 at 4203.835 kb on + strand, within AO353_19170 at 4203.835 kb on + strand, within AO353_19170 at 4203.835 kb on + strand, within AO353_19170 at 4203.835 kb on + strand, within AO353_19170 at 4203.836 kb on - strand, within AO353_19170 at 4203.836 kb on - strand, within AO353_19170 at 4203.836 kb on - strand, within AO353_19170 at 4203.836 kb on - strand, within AO353_19170 at 4203.845 kb on + strand, within AO353_19170 at 4203.845 kb on + strand, within AO353_19170 at 4203.845 kb on + strand, within AO353_19170 at 4203.846 kb on - strand, within AO353_19170 at 4203.846 kb on - strand, within AO353_19170 at 4203.846 kb on - strand, within AO353_19170
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 4,201,471 + AO353_19150 0.79 +0.7 4,201,471 + AO353_19150 0.79 +0.5 4,201,471 + AO353_19150 0.79 -0.1 4,201,472 - AO353_19150 0.79 +0.9 4,201,472 - AO353_19150 0.79 +0.1 4,201,472 - AO353_19150 0.79 -0.6 4,201,472 - AO353_19150 0.79 -1.5 4,201,474 + AO353_19150 0.80 -1.8 4,201,474 + AO353_19150 0.80 -0.3 4,201,474 + AO353_19150 0.80 +1.6 4,201,474 + AO353_19150 0.80 +0.1 4,201,474 + AO353_19150 0.80 +0.2 4,201,475 - AO353_19150 0.80 -0.9 4,201,475 - AO353_19150 0.80 -1.9 4,201,475 - AO353_19150 0.80 +0.0 4,201,522 + AO353_19150 0.83 -0.5 4,201,523 - AO353_19150 0.84 -0.1 4,201,544 + AO353_19150 0.85 -0.2 4,201,545 - AO353_19150 0.85 +0.5 4,201,759 + +0.0 4,201,759 + -1.1 4,201,759 + +0.1 4,201,759 + +0.1 4,201,759 + +1.7 4,201,759 + +1.7 4,201,759 + -0.9 4,201,759 + +0.5 4,201,759 + -1.1 4,201,760 - -0.8 4,201,760 - +0.4 4,201,760 - +1.2 4,201,760 - -0.3 4,201,760 - +0.4 4,201,760 - +0.1 4,201,760 - -0.7 4,201,766 + -0.2 4,201,767 - +0.9 4,201,767 - -3.1 4,201,767 - -0.8 4,201,771 + +2.0 4,201,771 + -1.6 4,201,772 - +0.3 4,201,867 + +0.1 4,201,883 + +0.4 4,201,883 + +1.1 4,201,883 + -0.7 4,201,883 + +0.6 4,201,883 + -0.1 4,201,883 + -0.1 4,201,883 + +0.4 4,201,883 + +2.4 4,201,883 + +0.9 4,201,883 + +0.7 4,201,883 + +0.7 4,201,883 + -2.0 4,201,883 + -1.9 4,201,883 + -1.5 4,201,883 + -0.9 4,201,883 + -0.2 4,201,883 + -0.4 4,201,883 + +0.4 4,201,883 + +1.1 4,201,884 - +0.4 4,201,884 - -1.7 4,201,884 - +0.7 4,201,884 - -1.6 4,201,884 - +1.1 4,201,884 - -0.5 4,201,884 - -0.1 4,201,884 - +1.1 4,201,884 - -0.3 4,201,910 + +1.4 4,201,910 + +0.7 4,201,910 + +1.0 4,201,911 - -2.5 4,201,911 - +1.3 4,201,939 + -1.5 4,201,939 + +0.6 4,201,939 + +0.4 4,201,939 + -0.1 4,201,939 + +0.4 4,201,940 - +0.8 4,201,940 - -0.8 4,201,940 - +1.1 4,202,003 + AO353_19155 0.14 -0.7 4,202,003 + AO353_19155 0.14 +0.4 4,202,003 + AO353_19155 0.14 -1.0 4,202,003 + AO353_19155 0.14 +1.0 4,202,004 - AO353_19155 0.15 +1.4 4,202,004 - AO353_19155 0.15 -0.8 4,202,004 - AO353_19155 0.15 +0.3 4,202,004 - AO353_19155 0.15 +1.1 4,202,004 - AO353_19155 0.15 +0.6 4,202,051 + AO353_19155 0.27 +0.1 4,202,051 + AO353_19155 0.27 +0.1 4,202,051 + AO353_19155 0.27 -2.2 4,202,051 + AO353_19155 0.27 +0.1 4,202,051 + AO353_19155 0.27 +0.1 4,202,051 + AO353_19155 0.27 +2.4 4,202,051 + AO353_19155 0.27 +0.0 4,202,051 + AO353_19155 0.27 +0.7 4,202,052 - AO353_19155 0.27 +0.5 4,202,052 - AO353_19155 0.27 +0.6 4,202,052 - AO353_19155 0.27 +0.8 4,202,052 - AO353_19155 0.27 -0.1 4,202,052 - AO353_19155 0.27 -0.7 4,202,052 - AO353_19155 0.27 +1.5 4,202,052 - AO353_19155 0.27 +0.6 4,202,052 - AO353_19155 0.27 +2.1 4,202,052 - AO353_19155 0.27 -0.5 4,202,078 + AO353_19155 0.33 +1.2 4,202,078 + AO353_19155 0.33 -0.3 4,202,078 + AO353_19155 0.33 -0.2 4,202,078 + AO353_19155 0.33 +0.1 4,202,078 + AO353_19155 0.33 +0.7 4,202,079 - AO353_19155 0.34 -0.7 4,202,079 - AO353_19155 0.34 -1.4 4,202,079 - AO353_19155 0.34 -1.0 4,202,156 + AO353_19155 0.53 -1.5 4,202,156 + AO353_19155 0.53 -0.3 4,202,156 + AO353_19155 0.53 +2.3 4,202,156 + AO353_19155 0.53 +0.1 4,202,156 + AO353_19155 0.53 -1.9 4,202,156 + AO353_19155 0.53 +0.4 4,202,156 + AO353_19155 0.53 +1.0 4,202,156 + AO353_19155 0.53 -0.6 4,202,156 + AO353_19155 0.53 -1.3 4,202,156 + AO353_19155 0.53 -0.6 4,202,157 - AO353_19155 0.53 -0.1 4,202,157 - AO353_19155 0.53 +0.9 4,202,157 - AO353_19155 0.53 -2.7 4,202,157 - AO353_19155 0.53 -0.1 4,202,157 - AO353_19155 0.53 +1.0 4,202,157 - AO353_19155 0.53 -0.4 4,202,157 - AO353_19155 0.53 -0.0 4,202,262 + AO353_19155 0.80 +0.3 4,202,262 + AO353_19155 0.80 +1.1 4,202,262 + AO353_19155 0.80 -0.6 4,202,262 + AO353_19155 0.80 -1.5 4,202,262 + AO353_19155 0.80 +0.8 4,202,262 + AO353_19155 0.80 -0.6 4,202,262 + AO353_19155 0.80 -2.9 4,202,262 + AO353_19155 0.80 -1.9 4,202,262 + AO353_19155 0.80 -0.2 4,202,263 - AO353_19155 0.80 -0.1 4,202,263 - AO353_19155 0.80 -0.4 4,202,263 - AO353_19155 0.80 +0.1 4,202,263 - AO353_19155 0.80 -1.1 4,202,263 - AO353_19155 0.80 -0.5 4,202,263 - AO353_19155 0.80 -1.0 4,202,297 + AO353_19155 0.89 +0.8 4,202,340 - -0.3 4,202,340 - -1.5 4,202,478 + +0.5 4,202,478 + +0.1 4,202,478 + -1.3 4,202,479 - -0.3 4,202,479 - -1.8 4,202,479 - -1.3 4,202,541 - -0.6 4,202,562 + AO353_19160 0.21 -0.9 4,202,562 + AO353_19160 0.21 +0.0 4,202,584 + AO353_19160 0.26 -1.0 4,202,584 + AO353_19160 0.26 -0.9 4,202,584 + AO353_19160 0.26 +2.1 4,202,584 + AO353_19160 0.26 -0.4 4,202,584 + AO353_19160 0.26 -0.9 4,202,584 + AO353_19160 0.26 -1.8 4,202,584 + AO353_19160 0.26 -0.2 4,202,585 - AO353_19160 0.26 +0.7 4,202,585 - AO353_19160 0.26 -2.5 4,202,614 + AO353_19160 0.32 -0.1 4,202,665 - AO353_19160 0.43 -2.0 4,202,810 + AO353_19160 0.72 +0.7 4,202,811 - AO353_19160 0.73 +0.6 4,202,811 - AO353_19160 0.73 -0.2 4,202,997 + AO353_19165 0.12 -1.1 4,202,997 + AO353_19165 0.12 -0.1 4,202,997 + AO353_19165 0.12 +0.7 4,203,027 + AO353_19165 0.19 -0.5 4,203,027 + AO353_19165 0.19 -0.6 4,203,027 + AO353_19165 0.19 +0.4 4,203,028 - AO353_19165 0.19 -0.9 4,203,029 + AO353_19165 0.19 -0.3 4,203,029 + AO353_19165 0.19 +2.8 4,203,029 + AO353_19165 0.19 +0.8 4,203,029 + AO353_19165 0.19 -0.7 4,203,029 + AO353_19165 0.19 -2.0 4,203,029 + AO353_19165 0.19 +0.3 4,203,029 + AO353_19165 0.19 +0.1 4,203,029 + AO353_19165 0.19 +0.1 4,203,029 + AO353_19165 0.19 +0.1 4,203,029 + AO353_19165 0.19 +1.2 4,203,030 - AO353_19165 0.19 +0.4 4,203,060 + AO353_19165 0.26 +0.3 4,203,069 + AO353_19165 0.28 +1.1 4,203,069 + AO353_19165 0.28 +0.5 4,203,069 + AO353_19165 0.28 +0.2 4,203,069 + AO353_19165 0.28 +0.7 4,203,070 - AO353_19165 0.28 +0.1 4,203,070 - AO353_19165 0.28 -0.9 4,203,070 - AO353_19165 0.28 -1.3 4,203,088 + AO353_19165 0.32 -1.6 4,203,089 - AO353_19165 0.32 +0.7 4,203,199 + AO353_19165 0.56 -0.7 4,203,199 + AO353_19165 0.56 +1.3 4,203,199 + AO353_19165 0.56 -1.6 4,203,199 + AO353_19165 0.56 -1.7 4,203,199 + AO353_19165 0.56 -1.6 4,203,200 - AO353_19165 0.56 +1.3 4,203,200 - AO353_19165 0.56 +0.3 4,203,200 - AO353_19165 0.56 +1.0 4,203,200 - AO353_19165 0.56 +1.0 4,203,462 - +0.3 4,203,536 - -0.3 4,203,536 - -0.2 4,203,621 + AO353_19170 0.10 -0.4 4,203,621 + AO353_19170 0.10 +0.1 4,203,716 - AO353_19170 0.14 +0.6 4,203,835 + AO353_19170 0.19 -1.5 4,203,835 + AO353_19170 0.19 +0.5 4,203,835 + AO353_19170 0.19 -0.9 4,203,835 + AO353_19170 0.19 -0.5 4,203,835 + AO353_19170 0.19 -0.9 4,203,836 - AO353_19170 0.19 +1.0 4,203,836 - AO353_19170 0.19 -1.5 4,203,836 - AO353_19170 0.19 +0.7 4,203,836 - AO353_19170 0.19 -1.1 4,203,845 + AO353_19170 0.20 +0.4 4,203,845 + AO353_19170 0.20 -1.7 4,203,845 + AO353_19170 0.20 -2.3 4,203,846 - AO353_19170 0.20 -1.1 4,203,846 - AO353_19170 0.20 +1.3 4,203,846 - AO353_19170 0.20 -2.7
Or see this region's nucleotide sequence