Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19125

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19120 and AO353_19125 are separated by 156 nucleotidesAO353_19125 and AO353_19130 are separated by 423 nucleotides AO353_19120: AO353_19120 - spermidine synthase, at 4,193,789 to 4,194,544 _19120 AO353_19125: AO353_19125 - enoyl-CoA hydratase, at 4,194,701 to 4,195,492 _19125 AO353_19130: AO353_19130 - RNA helicase, at 4,195,916 to 4,197,589 _19130 Position (kb) 4194 4195 4196Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4193.948 kb on + strand, within AO353_19120at 4193.948 kb on + strand, within AO353_19120at 4193.948 kb on + strand, within AO353_19120at 4193.948 kb on + strand, within AO353_19120at 4193.949 kb on - strand, within AO353_19120at 4193.949 kb on - strand, within AO353_19120at 4193.949 kb on - strand, within AO353_19120at 4194.096 kb on + strand, within AO353_19120at 4194.096 kb on + strand, within AO353_19120at 4194.096 kb on + strand, within AO353_19120at 4194.097 kb on - strand, within AO353_19120at 4194.117 kb on - strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.148 kb on + strand, within AO353_19120at 4194.218 kb on + strand, within AO353_19120at 4194.218 kb on + strand, within AO353_19120at 4194.219 kb on - strand, within AO353_19120at 4194.220 kb on + strand, within AO353_19120at 4194.220 kb on + strand, within AO353_19120at 4194.221 kb on - strand, within AO353_19120at 4194.221 kb on - strand, within AO353_19120at 4194.354 kb on + strand, within AO353_19120at 4194.354 kb on + strand, within AO353_19120at 4194.354 kb on + strand, within AO353_19120at 4194.355 kb on - strand, within AO353_19120at 4194.355 kb on - strand, within AO353_19120at 4194.355 kb on - strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.368 kb on + strand, within AO353_19120at 4194.369 kb on - strand, within AO353_19120at 4194.369 kb on - strand, within AO353_19120at 4194.717 kb on - strandat 4195.365 kb on + strand, within AO353_19125at 4195.366 kb on - strand, within AO353_19125at 4195.366 kb on - strand, within AO353_19125at 4195.500 kb on - strandat 4195.500 kb on - strandat 4195.539 kb on + strandat 4195.539 kb on + strandat 4195.540 kb on - strandat 4195.540 kb on - strandat 4195.560 kb on + strandat 4195.560 kb on + strandat 4195.561 kb on - strandat 4195.561 kb on - strandat 4195.641 kb on + strandat 4195.641 kb on + strandat 4195.641 kb on + strandat 4195.641 kb on + strandat 4195.641 kb on + strandat 4195.642 kb on - strandat 4195.642 kb on - strandat 4195.642 kb on - strandat 4195.642 kb on - strandat 4195.642 kb on - strandat 4195.663 kb on + strandat 4195.663 kb on + strandat 4195.663 kb on + strandat 4195.663 kb on + strandat 4195.663 kb on + strandat 4195.663 kb on + strandat 4195.663 kb on + strandat 4195.663 kb on + strandat 4195.663 kb on + strandat 4195.663 kb on + strandat 4195.664 kb on - strandat 4195.693 kb on + strandat 4195.693 kb on + strandat 4195.693 kb on + strandat 4195.725 kb on + strandat 4195.903 kb on + strandat 4195.903 kb on + strandat 4196.185 kb on - strand, within AO353_19130

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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4,193,948 + AO353_19120 0.21 -0.5
4,193,948 + AO353_19120 0.21 -0.9
4,193,948 + AO353_19120 0.21 +0.7
4,193,948 + AO353_19120 0.21 -0.3
4,193,949 - AO353_19120 0.21 -0.9
4,193,949 - AO353_19120 0.21 +2.0
4,193,949 - AO353_19120 0.21 -0.6
4,194,096 + AO353_19120 0.41 -0.1
4,194,096 + AO353_19120 0.41 -1.2
4,194,096 + AO353_19120 0.41 +1.0
4,194,097 - AO353_19120 0.41 -0.6
4,194,117 - AO353_19120 0.43 -1.3
4,194,146 + AO353_19120 0.47 +0.5
4,194,146 + AO353_19120 0.47 +1.4
4,194,146 + AO353_19120 0.47 +0.0
4,194,146 + AO353_19120 0.47 -1.8
4,194,146 + AO353_19120 0.47 -0.6
4,194,146 + AO353_19120 0.47 -1.4
4,194,146 + AO353_19120 0.47 -0.2
4,194,146 + AO353_19120 0.47 +0.1
4,194,146 + AO353_19120 0.47 -0.9
4,194,146 + AO353_19120 0.47 -0.3
4,194,146 + AO353_19120 0.47 -0.9
4,194,146 + AO353_19120 0.47 +0.3
4,194,146 + AO353_19120 0.47 +0.4
4,194,146 + AO353_19120 0.47 -0.1
4,194,146 + AO353_19120 0.47 -1.9
4,194,146 + AO353_19120 0.47 -2.3
4,194,146 + AO353_19120 0.47 -0.2
4,194,147 - AO353_19120 0.47 -1.3
4,194,147 - AO353_19120 0.47 +1.7
4,194,147 - AO353_19120 0.47 -0.9
4,194,147 - AO353_19120 0.47 -0.1
4,194,147 - AO353_19120 0.47 -2.3
4,194,147 - AO353_19120 0.47 -1.9
4,194,147 - AO353_19120 0.47 -0.5
4,194,147 - AO353_19120 0.47 +0.5
4,194,147 - AO353_19120 0.47 -0.2
4,194,147 - AO353_19120 0.47 -0.6
4,194,148 + AO353_19120 0.47 -1.6
4,194,218 + AO353_19120 0.57 +0.2
4,194,218 + AO353_19120 0.57 +0.3
4,194,219 - AO353_19120 0.57 -0.0
4,194,220 + AO353_19120 0.57 -0.8
4,194,220 + AO353_19120 0.57 -1.0
4,194,221 - AO353_19120 0.57 -1.4
4,194,221 - AO353_19120 0.57 -0.9
4,194,354 + AO353_19120 0.75 +1.5
4,194,354 + AO353_19120 0.75 +2.4
4,194,354 + AO353_19120 0.75 -1.0
4,194,355 - AO353_19120 0.75 -0.6
4,194,355 - AO353_19120 0.75 +1.4
4,194,355 - AO353_19120 0.75 +0.1
4,194,357 + AO353_19120 0.75 +0.7
4,194,357 + AO353_19120 0.75 +1.1
4,194,357 + AO353_19120 0.75 +2.1
4,194,357 + AO353_19120 0.75 -0.6
4,194,357 + AO353_19120 0.75 -1.1
4,194,357 + AO353_19120 0.75 -1.3
4,194,357 + AO353_19120 0.75 -0.3
4,194,357 + AO353_19120 0.75 -1.1
4,194,357 + AO353_19120 0.75 +0.4
4,194,357 + AO353_19120 0.75 -1.2
4,194,357 + AO353_19120 0.75 +1.0
4,194,357 + AO353_19120 0.75 +0.1
4,194,358 - AO353_19120 0.75 -0.6
4,194,358 - AO353_19120 0.75 -0.9
4,194,358 - AO353_19120 0.75 -0.6
4,194,358 - AO353_19120 0.75 -1.6
4,194,358 - AO353_19120 0.75 -0.0
4,194,358 - AO353_19120 0.75 -0.2
4,194,358 - AO353_19120 0.75 -0.7
4,194,358 - AO353_19120 0.75 +0.7
4,194,358 - AO353_19120 0.75 +0.5
4,194,358 - AO353_19120 0.75 -2.5
4,194,368 + AO353_19120 0.77 -0.7
4,194,369 - AO353_19120 0.77 -1.6
4,194,369 - AO353_19120 0.77 -0.6
4,194,717 - -1.9
4,195,365 + AO353_19125 0.84 +0.7
4,195,366 - AO353_19125 0.84 -2.3
4,195,366 - AO353_19125 0.84 +1.2
4,195,500 - -0.9
4,195,500 - +3.7
4,195,539 + +0.1
4,195,539 + +0.1
4,195,540 - -0.1
4,195,540 - -0.6
4,195,560 + +0.4
4,195,560 + -1.6
4,195,561 - +2.4
4,195,561 - +2.0
4,195,641 + +0.4
4,195,641 + -0.9
4,195,641 + -0.5
4,195,641 + -0.4
4,195,641 + +0.2
4,195,642 - +0.5
4,195,642 - +2.0
4,195,642 - +0.8
4,195,642 - +0.1
4,195,642 - +0.1
4,195,663 + +0.3
4,195,663 + +0.3
4,195,663 + +0.7
4,195,663 + -0.7
4,195,663 + +0.2
4,195,663 + +0.3
4,195,663 + +0.6
4,195,663 + -0.5
4,195,663 + +0.1
4,195,663 + +1.7
4,195,664 - -0.1
4,195,693 + +1.1
4,195,693 + +2.1
4,195,693 + +1.4
4,195,725 + +0.7
4,195,903 + -0.6
4,195,903 + -1.2
4,196,185 - AO353_19130 0.16 -0.3

Or see this region's nucleotide sequence